Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 333 a.a., ABC transporter, membrane spanning protein (peptide) from Agrobacterium fabrum C58

 Score =  143 bits (360), Expect = 7e-39
 Identities = 86/270 (31%), Positives = 143/270 (52%), Gaps = 20/270 (7%)

Query: 45  SSYLVQLMEFNFGLN-KNGVPILHELLVVFPATIELCTIAFILSLLVGIPIGTLAGMRQG 103
           ++Y   L  F+ G++ + GVP+   ++   P T+ L  +A +++LLVGI  GT+  +   
Sbjct: 79  ANYYTSLAHFSLGISPRYGVPVADLIMERLPGTLTLMVLAIVIALLVGIAAGTIMALNAT 138

Query: 104 KWLDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQIDHVTGFA-LID 162
           +  D I+S  S+  YS P FW+ L+ I+ FS+     P  G   +        GF  LID
Sbjct: 139 RAADRILSVASLLFYSVPTFWIGLIFIIVFSVKLGWLPAGGMKTIGASSG---GFGWLID 195

Query: 163 AFLSQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAAKIKGL 222
                           + +  LP   LAL          R+S+ EV+ Q+++R AK KGL
Sbjct: 196 R---------------VSYALLPATSLALYYMAIYARLTRSSILEVIGQDHVRTAKAKGL 240

Query: 223 SNYQIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALANRDFMS 282
           +  Q+V +HVLRNA+ P+    G+ ++ +L  AI+ E++F+WPG+GR   DA+  R++  
Sbjct: 241 APRQVVLRHVLRNALIPITTVAGIHVAGILGGAIVIETVFSWPGMGRLAFDAVMAREYTL 300

Query: 283 IQAGVIVVGTLVLTANILSDLIGAAANPLV 312
           +   ++V   LV+  N + D+I AA +P +
Sbjct: 301 LLGIMLVSSVLVICVNAIVDIIQAALDPRI 330