Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 314 a.a., ABC transporter membrane spanning protein (oligopeptide) from Agrobacterium fabrum C58

 Score =  141 bits (356), Expect = 2e-38
 Identities = 85/270 (31%), Positives = 148/270 (54%), Gaps = 20/270 (7%)

Query: 47  YLVQLMEFNFGLNK-NGVPILHELLVVFPATIELCTIAFILSLLVGIPIGTLAGMRQGKW 105
           +L  L++ N G++     P +  +L   PAT+EL   A +LSL+VG+P+G  AG +    
Sbjct: 58  FLKGLLQGNLGVSYVYKEPAVELILSRLPATLELAFAAVLLSLIVGVPLGLAAGWKPESP 117

Query: 106 LDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGR--YDLLYQIDHVTGFALIDA 163
           L  II   S+ G+S PIFW+A+++IM FS+     P +GR   ++L+ I     F  +D 
Sbjct: 118 LARIIMIGSIFGFSLPIFWIAVLLIMIFSVQLGWLPSSGRGATEILFGIPW--SFVTLDG 175

Query: 164 FLSQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAAKIKGLS 223
                          + H+ LP + L+L   + V     A V E M+  Y+R A+ KGLS
Sbjct: 176 ---------------LRHMLLPAISLSLFNISMVTRLTEAGVREAMSSEYVRFARAKGLS 220

Query: 224 NYQIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALANRDFMSI 283
             +I++ HVL+N + P++   G+ +   +  +++TE+IF WPG+G+ ++D++A  D   I
Sbjct: 221 PKRILSVHVLKNVMIPVVTVVGLDIGQTIAFSVVTETIFAWPGVGKIIIDSIAALDRPVI 280

Query: 284 QAGVIVVGTLVLTANILSDLIGAAANPLVR 313
            A +++V  + +  N++ D+     +P +R
Sbjct: 281 VAYLMLVVVMFVIINLVVDVTYRLLDPRIR 310