Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 322 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  139 bits (350), Expect = 9e-38
 Identities = 79/260 (30%), Positives = 143/260 (55%), Gaps = 16/260 (6%)

Query: 55  NFGLN-KNGVPILHELLVVFPATIELCTIAFILSLLVGIPIGTLAGMRQGKWLDTIISFI 113
           NFG++ +NG  +L  +   FPAT+EL  +A ++SL+VG+P+G L  +R+GKW    + F+
Sbjct: 75  NFGVSYRNGQQVLPLIAERFPATLELVLVATVISLVVGLPLGVLTAIRRGKWYTEGLQFL 134

Query: 114 SMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQIDHVTGFALIDAFLSQSPYRSQ 173
           S+ G S P F + +++I+ FS+     P  GR D++      TG       L  S  R+ 
Sbjct: 135 SIVGVSLPSFVVGILLILVFSVSLGWAPAFGRGDVVQLGWWSTG-------LLTSSGRAA 187

Query: 174 ALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAAKIKGLSNYQIVTQHVL 233
                   L LP + L+L   T V+  +RA + EV+  ++++ A+ +G+  ++I  +H L
Sbjct: 188 --------LILPAIALSLYQITLVMRLVRAEMLEVLRSDFVKFARARGIPRWRIYFRHAL 239

Query: 234 RNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALANRDFMSIQAGVIVVGTL 293
           RN + P++    + + S++  A+ITE++F WPG+G   + A+   D   + A + ++  +
Sbjct: 240 RNCLMPVVTLTTMNVGSLIAFALITETVFQWPGMGMLFIQAVTFLDIPVMAAYLCIISFI 299

Query: 294 VLTANILSDLIGAAANPLVR 313
            +  N   D+  A  +P +R
Sbjct: 300 FVVLNTFVDIAYAVIDPRLR 319