Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 342 a.a., dipeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  163 bits (413), Expect = 5e-45
 Identities = 94/331 (28%), Positives = 171/331 (51%), Gaps = 27/331 (8%)

Query: 8   KFNLFIITLLILTMVGYSLARFDPHSP-WTLIG--------------------FWQGWSS 46
           +F   I++L IL  + + + R  P  P   ++G                     +Q +  
Sbjct: 12  RFLQLIVSLFILLCITFIIGRVMPTDPVGAIVGELADPKAYEAMRARLGLDLPLYQQFFI 71

Query: 47  YLVQLMEFNFGLN-KNGVPILHELLVVFPATIELCTIAFILSLLVGIPIGTLAGMRQGKW 105
           YL  L+  +FG+    G P+  +L   FPAT EL T+A I+S ++G+P+G  A + +  +
Sbjct: 72  YLRGLLHGDFGIAILTGNPVTRDLAQAFPATFELATLAIIISTIIGVPLGLAAALFRDTF 131

Query: 106 LDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQ--IDHVTGFALIDA 163
           +D      ++ G+S P+FW  ++ ++ F   F +    GR D+ Y+  ++  TG  L+D+
Sbjct: 132 IDKFARVFALVGHSIPVFWFGIVGLVIFYASFNLVGGPGRVDVFYEGIVEPKTGLMLVDS 191

Query: 164 FLSQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAAKIKGLS 223
            L+     ++   + + H+ LP ++LA      +    RA   E ++Q+Y+ AA+ KG+S
Sbjct: 192 LLAGE---TEIFWNALSHIILPAIILAYMAMAYITRMTRAFTLEQLSQDYVIAARAKGVS 248

Query: 224 NYQIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALANRDFMSI 283
             + +T+HVL N    +I    +   ++L  A++TE +F+WPGIG+++ +AL   D  +I
Sbjct: 249 PTRTITRHVLPNIAVQLITVLAISYGNLLEGAVVTEIVFSWPGIGQYMTNALLIGDMNAI 308

Query: 284 QAGVIVVGTLVLTANILSDLIGAAANPLVRK 314
            A  IV+G + +  N L+DL     +P  R+
Sbjct: 309 LAATIVIGFIFMLLNFLADLAYTTLDPRTRE 339