Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 355 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  178 bits (451), Expect = 2e-49
 Identities = 94/276 (34%), Positives = 154/276 (55%), Gaps = 6/276 (2%)

Query: 41  WQGWSSYLVQLMEFNFGLNKNGV-PILHELLVVFPATIELCTIAFILSLLVGIPIGTLAG 99
           WQ +  YL Q +  +FG++     P++ ++  VFPATIEL TI  I+  + GIP+G LA 
Sbjct: 81  WQQFFLYLKQALSGDFGISVLTTNPVMEDIKRVFPATIELATIGTIIGAVFGIPLGVLAA 140

Query: 100 MRQGKWLDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQIDH--VTG 157
           +++G + D ++  I + GYS PIFWL L+ ++ F          GR D++Y+     VTG
Sbjct: 141 VKRGSFADQVVRVIGLIGYSVPIFWLGLLALLVFYARLQWVAYPGRMDIVYEFTFTPVTG 200

Query: 158 FALIDAFLSQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAA 217
           F LIDA   +   +   L  +  H+ LP  +L       +    R+ +   ++Q YI AA
Sbjct: 201 FFLIDAIWQR---QWDVLWDLFRHIILPASLLGYFSLAYISRMTRSFMLNELSQEYIVAA 257

Query: 218 KIKGLSNYQIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALAN 277
           + KGLS  +I+  H LRNA  P++    +  + +L  +++TE+IF WPG+G ++ ++L N
Sbjct: 258 RAKGLSETRIIWLHALRNAAVPLVTVIALSYAGLLEGSVLTETIFAWPGLGLYITNSLQN 317

Query: 278 RDFMSIQAGVIVVGTLVLTANILSDLIGAAANPLVR 313
            D  ++  G IV+G + +  N+ SDL+    +P  R
Sbjct: 318 ADMNAVLGGTIVIGAIFVGINLFSDLLYRTLDPRTR 353