Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., dipeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  220 bits (560), Expect = 4e-62
 Identities = 117/336 (34%), Positives = 195/336 (58%), Gaps = 26/336 (7%)

Query: 1   MFVYTVRKFNLFIITLLILTMVGYSLARFDPHSPWTL------------------IGF-- 40
           M  +   K    + T L +T+V ++  R  P  P  L                  +GF  
Sbjct: 1   MIRFIFGKLLYLVPTFLGITIVAFAFVRVLPGDPVLLMAGERGISPERHAQLAEQLGFAQ 60

Query: 41  --WQGWSSYLVQLMEFNFGLNK-NGVPILHELLVVFPATIELCTIAFILSLLVGIPIGTL 97
             W+ +  +L +L++ + G +     P+L E L +FPAT+EL  +A I++ ++G+P+G +
Sbjct: 61  PIWEQYLHFLGRLLQGDLGNSLVTKKPVLTEFLALFPATVELGLVAIIIATVIGVPVGVI 120

Query: 98  AGMRQGKWLDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQIDHVTG 157
           A +R+G W D I    ++ G+S PIFW  L++I+ FS      PV+GR  L+Y    VTG
Sbjct: 121 AAIRRGSWFDQISMTTALVGFSMPIFWWGLLLIIMFSGILQWTPVSGRISLMYFFPSVTG 180

Query: 158 FALIDAFLSQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAA 217
           F LID+ +S    +  A  S + HL LP +VLA  P   +  Q R+++ EV+ ++Y+R A
Sbjct: 181 FMLIDSLISG---QKGAFASALSHLILPSVVLATIPLAVIARQTRSAMLEVLGEDYVRTA 237

Query: 218 KIKGLSNYQIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALAN 277
           + KG+S  ++V  H LRNA+ P+I   G+Q+  ++  AI+TE+IF+WPGIG+W++D+++ 
Sbjct: 238 RAKGMSASRVVGIHALRNAMIPVITTIGLQIGVLMAGAILTETIFSWPGIGKWMIDSISR 297

Query: 278 RDFMSIQAGVIVVGTLVLTANILSDLIGAAANPLVR 313
           RD+  +Q+G++++  LV+  N+L DL     NP +R
Sbjct: 298 RDYPVVQSGLLLIAGLVMVVNLLVDLTYGLINPRIR 333