Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 340 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  159 bits (403), Expect = 7e-44
 Identities = 88/303 (29%), Positives = 156/303 (51%), Gaps = 10/303 (3%)

Query: 18  ILTMVGYSLARFDPHSPWTLIGF----WQGWSSYLVQLMEFNFGLN-KNGVPILHELLVV 72
           +  +VG    R      +  +GF    WQ +  YL  +   +FG + + G P++ +++ V
Sbjct: 41  VRAIVGEDATRETYEQVYHALGFDRPLWQQFIYYLGDVFTGDFGTSIRTGRPVIEDIIRV 100

Query: 73  FPATIELCTIAFILSLLVGIPIGTLAGMRQGKWLDTIISFISMSGYSAPIFWLALMMIMA 132
            PAT+EL T A ++   +GIP+G  A + + +W D ++  +S+ G+S PIFW  ++ ++ 
Sbjct: 101 MPATMELATFAILIGAGLGIPMGVYAAVNKDRWQDHLVRVLSLFGHSMPIFWTGMIALIV 160

Query: 133 FSLHFPVFPVAGRYDLLY--QIDHVTGFALIDAFLSQSPYRSQALQSVIEHLTLPCLVLA 190
           F  H  +    GR D  Y   ++  TGF LID+ L+      +   S I HL LP  +L 
Sbjct: 161 FYAHLGLVGGGGRMDQFYIGLVEERTGFLLIDSLLAGD---MEVFWSAINHLILPAALLG 217

Query: 191 LAPTTQVIGQMRASVAEVMNQNYIRAAKIKGLSNYQIVTQHVLRNAIPPMIPKFGVQLSS 250
            + +  +    R+ + + + Q Y+  A++KGLS  Q V  H   N    ++    +   S
Sbjct: 218 YSSSAYITRMTRSFMLDQLGQEYVTTARVKGLSQRQTVWLHAFGNIRVQLVTIIALAYGS 277

Query: 251 MLTLAIITESIFNWPGIGRWLLDALANRDFMSIQAGVIVVGTLVLTANILSDLIGAAANP 310
           +L  A++ E++F WPG G++L   L   D  ++   V++VG + +  N+LSD++    +P
Sbjct: 278 LLEGAVLIETVFAWPGFGQYLTSNLIIGDMNAVMTCVLIVGVIFIGLNLLSDILYRFFDP 337

Query: 311 LVR 313
             R
Sbjct: 338 RTR 340