Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., ABC transporter, membrane spanning protein (dipeptide) from Agrobacterium fabrum C58

 Score =  153 bits (387), Expect = 5e-42
 Identities = 83/272 (30%), Positives = 145/272 (53%), Gaps = 10/272 (3%)

Query: 47  YLVQLMEFNFG---LNKNGVPILHELLVVFPATIELCTIAFILSLLVGIPIGTLAGMRQG 103
           Y+ Q++  +FG   L +N  P+  ++  VFPAT EL T A IL+ L+GIP+G  A ++QG
Sbjct: 73  YVTQVLHGDFGNSILTRN--PVWIDIKRVFPATFELATAALILAALIGIPLGVWAAVKQG 130

Query: 104 KWLDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLY--QIDHVTGFALI 161
           K  D +I  + ++G+S P+F LAL+ ++ F     V P  GR D++Y   I  VTG   +
Sbjct: 131 KLTDQVIRVVCLAGHSVPVFMLALISLLVFYATLGVAPGPGRQDIIYDGMITQVTGLMTV 190

Query: 162 DAFLSQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAAKIKG 221
           D  L+       A    + H+  P  +LA      +    RA + + +   Y+  A+ KG
Sbjct: 191 DTLLAGD---WGAFYDAVAHMVQPVCILAYFSMAYITRMTRAFMIDALKGEYVITARAKG 247

Query: 222 LSNYQIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALANRDFM 281
           LS   ++  H        ++    +  + +L  A++TE++F+WPG+G++L  +L N D  
Sbjct: 248 LSAMTVIWGHAFPTVAVQLVTVLALTYAGLLEGAVVTETVFSWPGLGQYLTVSLMNADMN 307

Query: 282 SIQAGVIVVGTLVLTANILSDLIGAAANPLVR 313
            +    +++G + +  N+L+D++    +P VR
Sbjct: 308 PVVGATLLIGIIYVGLNLLADVLYRVMDPRVR 339