Pairwise Alignments

Query, 540 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 526 a.a., Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  360 bits (923), Expect = e-103
 Identities = 194/533 (36%), Positives = 296/533 (55%), Gaps = 11/533 (2%)

Query: 4   LLRFTLGLCSMTLLAGCGENIDHSKIRSSGFVYCGESAPTTFNPQLADNDITSDALGPQI 63
           +L+  L L +MT+ A          +++   VYC E +P  FNPQL  +  T DA    I
Sbjct: 1   MLKLGLSLVAMTVAAS---------VQAKTLVYCSEGSPEGFNPQLFTSGTTYDASSVPI 51

Query: 64  YNTLLTIDPETHLPVASLASSWTVNSTGLEYVFKLRPDVAFQTTPWFSPTRPLNADDVVF 123
           YN L+     T   +  LA  W ++  G  Y F LR  V +Q++  F PTR LNADDVVF
Sbjct: 52  YNRLVEFKTGTTEVIPGLAEKWDISEDGKTYTFHLRKGVKWQSSKDFKPTRELNADDVVF 111

Query: 124 SFRRIIDPTNPYHKVGQTQYPWFKGIDFQNLLVDVSALDDLTVKFVLSRPDNSFLSNIAT 183
           SF R  +  NPYHKV    Y +F+G+   +L+ +V  +DD TV+FVL+RP+  FL+++A 
Sbjct: 112 SFDRQKNEQNPYHKVSGGSYEYFEGMGLPDLISEVKKVDDHTVQFVLTRPEAPFLADLAM 171

Query: 184 SHAVILSLEYANQLIIDDEKEKLDNLPLGTGPFYLAEYHPRDLIRLKRHPQYWEGAAKVE 243
             A ILS EYA+ ++     EK+D  P+GTGPF L +Y     I  K    YW    +++
Sbjct: 172 DFASILSKEYADNMLKAGTPEKVDLNPVGTGPFQLVQYQKDSRILYKAFDGYWGTKPQID 231

Query: 244 QVVFDISQRGTGMLAKLLRNECDVLNAPISSQLPAIEKNPDIVLQTTPAMNVAFIAVNTQ 303
           ++VF I+   +   AKL +NEC V+  P  + +  ++++ +I L     +NV +++ N Q
Sbjct: 232 RLVFSITPDASVRYAKLQKNECQVMPYPNPADIARMKEDKNINLMEQAGLNVGYLSYNVQ 291

Query: 304 HPALNDNRVRKALNFAINRQNILDSVYYGTGSIAFTILPPTSWAYQQDTAQIRYDRNYAQ 363
              L+D +VR+AL +A+N++ I+ +VY G G  A  ++PPT W Y  D     YD   A+
Sbjct: 292 KKPLDDVKVRQALTYAVNKEAIIKAVYQGAGVAAKNLIPPTMWGYNDDIKDYGYDPEKAK 351

Query: 364 ALLREAGFATGLELTM-SVPVEPKAYNPSPRKTAELIQANLADIGVTLRLISEDRSERQE 422
           ALL+EAG   G  + + ++PV+ + YNP+ R+ AE+IQA+ A IGV  ++++ +  E  +
Sbjct: 352 ALLKEAGLEKGFTIDLWAMPVQ-RPYNPNARRMAEMIQADWAKIGVQAKIVTYEWGEYLK 410

Query: 423 LSIRNNIDLYLSGWTGDTGDPDNFLRPLLSCDSNRAGLNVSMWCDSDFDFLLDLALEANK 482
            +        + GWTGD GDPDNF   L SCD+ + G N S WC   F+ L+  A   + 
Sbjct: 411 RAKDGEHQTVMMGWTGDNGDPDNFFATLFSCDAAQQGSNYSKWCYKPFEDLIQPARATDD 470

Query: 483 PRYRLNLYHQAQNILNQEFPVIPLAHGIQFTAYSKSLTGIRISPFNVQPFNTV 535
              R+ LY QAQ +++ + P + +AH   +    K + G  + P     F  V
Sbjct: 471 HNKRIELYKQAQVVMHDQAPALIIAHSTVYEPVRKEVKGYVVDPLGKHHFENV 523