Pairwise Alignments

Query, 540 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 547 a.a., predicted antimicrobial peptide transporter subunit (NCBI) from Escherichia coli BW25113

 Score =  434 bits (1117), Expect = e-126
 Identities = 225/516 (43%), Positives = 314/516 (60%), Gaps = 1/516 (0%)

Query: 22  ENIDHSKIRSSGFVYCGESAPTTFNPQLADNDITSDALGPQIYNTLLTIDPETHLPVASL 81
           E+  H+ IR SGFVYC      TFNP  A + +  D L  Q Y+ LL +DP T+  +  L
Sbjct: 24  ESPPHADIRDSGFVYCVSGQVNTFNPSKASSGLIVDTLAAQFYDRLLDVDPYTYRLMPEL 83

Query: 82  ASSWTVNSTGLEYVFKLRPDVAFQTTPWFSPTRPLNADDVVFSFRRIIDPTNPYHKVGQT 141
           A SW V   G  Y F LR DV FQ T WF+PTR +NADDVVF+F+RI D  NP+H V  +
Sbjct: 84  AESWEVLDNGATYRFHLRRDVPFQKTDWFTPTRKMNADDVVFTFQRIFDRNNPWHNVNGS 143

Query: 142 QYPWFKGIDFQNLLVDVSALDDLTVKFVLSRPDNSFLSNIATSHAVILSLEYANQLIIDD 201
            +P+F  + F + +  V  LD+ TV+F L++PD SFL ++AT +A ++S EYA +L  +D
Sbjct: 144 NFPYFDSLQFADNVKSVRKLDNHTVEFRLAQPDASFLWHLATHYASVMSAEYARKLEKED 203

Query: 202 EKEKLDNLPLGTGPFYLAEYHPRDLIRLKRHPQYWEGAAKVEQVVFDISQRGTGMLAKLL 261
            +E+LD  P+GTGP+ L+EY     IRL+RH  +W G   + QVV D+   GTG L+KLL
Sbjct: 204 RQEQLDRQPVGTGPYQLSEYRAGQFIRLQRHDDFWRGKPLMPQVVVDLGSGGTGRLSKLL 263

Query: 262 RNECDVLNAPISSQLPAIEKNPDIVLQTTPAMNVAFIAVNTQHPALNDNRVRKALNFAIN 321
             ECDVL  P +SQL  +  +P + L   P MNVA++A NT  P LN+  VR AL  AIN
Sbjct: 264 TGECDVLAWPAASQLSILRDDPRLRLTLRPGMNVAYLAFNTAKPPLNNPAVRHALALAIN 323

Query: 322 RQNILDSVYYGTGSIAFTILPPTSWAYQQDTAQIRYDRNYAQALLREAGFATGLELTMSV 381
            Q ++ S+YYGT   A +ILP  SWAY  +     Y+   ++  L+  G    L L + V
Sbjct: 324 NQRLMQSIYYGTAETAASILPRASWAYDNEAKITEYNPAKSREQLKSLGL-ENLTLKLWV 382

Query: 382 PVEPKAYNPSPRKTAELIQANLADIGVTLRLISEDRSERQELSIRNNIDLYLSGWTGDTG 441
           P   +A+NPSP KTAELIQA++A +GV + ++  +   ++   +  + DL LSGW  D+ 
Sbjct: 383 PTRSQAWNPSPLKTAELIQADMAQVGVKVVIVPVEGRFQEARLMDMSHDLTLSGWATDSN 442

Query: 442 DPDNFLRPLLSCDSNRAGLNVSMWCDSDFDFLLDLALEANKPRYRLNLYHQAQNILNQEF 501
           DPD+F RPLLSC +  +  N++ WCD  FD +L  AL + +   R+  Y +AQ+IL QE 
Sbjct: 443 DPDSFFRPLLSCAAIHSQTNLAHWCDPKFDSVLRKALSSQQLAARIEAYDEAQSILAQEL 502

Query: 502 PVIPLAHGIQFTAYSKSLTGIRISPFNVQPFNTVER 537
           P++PLA  ++  AY   + G+ +SPF    F  V R
Sbjct: 503 PILPLASSLRLQAYRYDIKGLVLSPFGNASFAGVYR 538