Pairwise Alignments

Query, 540 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 552 a.a., ABC-type dipeptide transport system, periplasmic component from Kangiella aquimarina DSM 16071

 Score =  346 bits (888), Expect = 1e-99
 Identities = 195/510 (38%), Positives = 286/510 (56%), Gaps = 3/510 (0%)

Query: 27  SKIRSSGFVYCGESAPTTFNPQLADNDITSDALGPQIYNTLLTIDPETHLPVASLASSWT 86
           S  R S  VYC E +P  FNPQL  +  + DA    IYN L+T +  T     +LA SW 
Sbjct: 31  SNQRDSLLVYCSEGSPDAFNPQLVSSGTSYDATAHTIYNQLVTYNSGTTDIAPALAESWK 90

Query: 87  VNSTGLEYVFKLRPDVAFQTTPWFSPTRPLNADDVVFSFRRIIDPTNPYHKVGQTQYPWF 146
           ++  G  Y FKL+  V F     F+PTR LNADDV+FSF R    ++P+H+V   +YP+F
Sbjct: 91  ISDDGTRYRFKLKEGVNFHGNQDFTPTRTLNADDVIFSFNRQRLSSHPFHEVSGGRYPYF 150

Query: 147 KGIDFQNLLVDVSALDDLTVKFVLSRPDNSFLSNIATSHAVILSLEYANQLIIDDEKEKL 206
                  L++D++ + D  V+FVLSRP++ FL+ +AT  A ILS EYA  L   D  E +
Sbjct: 151 YSQGLDQLILDINKVSDKEVEFVLSRPESPFLAILATPFASILSAEYAEVLQGLDRLEWI 210

Query: 207 DNLPLGTGPFYLAEYHPRDLIRLKRHPQYWEGAAKVEQVVFDISQRGTGMLAKLLRNECD 266
           D+ P+GTGPF    Y P   IR +    Y+ GA K++ +V+ I+       A+    ECD
Sbjct: 211 DSKPIGTGPFRFKRYEPDSYIRYEAFEDYFGGAPKIKDLVYSITPDAAMRFARFSAGECD 270

Query: 267 VLNAPISSQLPAIEKNPDIVLQTTPAMNVAFIAVNTQHPALNDNRVRKALNFAINRQNIL 326
           +++ P+   L    +N   +L+  P  NVA+ A N + P  +D +VR+AL+ AINR+ IL
Sbjct: 271 IMSNPLPVHLRIARQNKLNILE-IPGFNVAYWAFNVEKPPFHDVKVRQALSMAINREAIL 329

Query: 327 DSVYYGTGSIAFTILPPTSWAYQQDTAQIRYDRNYAQALLREAGFATGLELTM-SVPVEP 385
            +VY     IA + +PP+SWAY +  +++RY+   A+ LL EAG+  G  + + ++P++ 
Sbjct: 330 KAVYDRQAQIATSPIPPSSWAYNKQVSRVRYNTQQAKQLLAEAGYENGFTIDIWAMPIQ- 388

Query: 386 KAYNPSPRKTAELIQANLADIGVTLRLISEDRSERQELSIRNNIDLYLSGWTGDTGDPDN 445
           + YNP+ RK AE++Q +L  IGV  R+IS +         +      L GW  D GDP N
Sbjct: 389 RTYNPNARKMAEMMQQDLEKIGVKARIISYEWGTFLARVAQGLHHSVLLGWNADNGDPSN 448

Query: 446 FLRPLLSCDSNRAGLNVSMWCDSDFDFLLDLALEANKPRYRLNLYHQAQNILNQEFPVIP 505
           FL PLLSC S R+G N + WC   FD L+  A +++    R   Y QAQ +  +E P + 
Sbjct: 449 FLNPLLSCASARSGNNYAKWCHPTFDQLILNASQSSDIEKRKQYYLQAQALFKEEAPWLT 508

Query: 506 LAHGIQFTAYSKSLTGIRISPFNVQPFNTV 535
           +AH  +       +TG+ ISP     F+ V
Sbjct: 509 IAHANKSLLTQPDVTGLVISPVGNVEFDKV 538