Pairwise Alignments

Query, 540 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 535 a.a., ABC-type dipeptide transport system, periplasmic component from Enterobacter asburiae PDN3

 Score =  353 bits (906), Expect = e-102
 Identities = 190/535 (35%), Positives = 294/535 (54%), Gaps = 11/535 (2%)

Query: 2   NALLRFTLGLCSMTLLAGCGENIDHSKIRSSGFVYCGESAPTTFNPQLADNDITSDALGP 61
           + +L+  L L +MT+ A          +++   VYC E +P  FNPQL  +  T DA   
Sbjct: 8   SGMLKLGLSLVAMTVAAS---------VQAKTLVYCSEGSPEGFNPQLFTSGTTYDASSV 58

Query: 62  QIYNTLLTIDPETHLPVASLASSWTVNSTGLEYVFKLRPDVAFQTTPWFSPTRPLNADDV 121
            IYN L+     T   +  LA  W V+  G  Y F LR  V +Q +  F PTR  NADDV
Sbjct: 59  PIYNRLVEFKTGTTEVIPGLAEKWDVSEDGKTYTFHLRQGVKWQDSKEFKPTRDFNADDV 118

Query: 122 VFSFRRIIDPTNPYHKVGQTQYPWFKGIDFQNLLVDVSALDDLTVKFVLSRPDNSFLSNI 181
           VFSF R  +  NPYHKV    Y +F+G+   +L+ +V  +DD TV+FVL+RP+  FL+++
Sbjct: 119 VFSFDRQKNAQNPYHKVSGGSYEYFEGMGLPDLIAEVKKVDDKTVQFVLTRPEAPFLADL 178

Query: 182 ATSHAVILSLEYANQLIIDDEKEKLDNLPLGTGPFYLAEYHPRDLIRLKRHPQYWEGAAK 241
           A   A ILS EYA+ ++     EK+D  P+GTGPF L +Y     I  K    YW    +
Sbjct: 179 AMDFASILSKEYADNMLKAGTPEKVDLNPIGTGPFQLLQYQKDSRILYKAFEGYWGTKPQ 238

Query: 242 VEQVVFDISQRGTGMLAKLLRNECDVLNAPISSQLPAIEKNPDIVLQTTPAMNVAFIAVN 301
           ++++VF I+   +   AKL +NEC V+  P  + +  ++++ +I L     +NV +++ N
Sbjct: 239 IDRLVFSITPDASVRYAKLQKNECQVMPYPNPADIARMKQDKNINLLEQAGLNVGYLSFN 298

Query: 302 TQHPALNDNRVRKALNFAINRQNILDSVYYGTGSIAFTILPPTSWAYQQDTAQIRYDRNY 361
           T+    +D +VR+AL +A+N++ I+ +VY G G  A  ++PPT W Y  D     YD   
Sbjct: 299 TEKKPFDDVKVRQALTYAVNKEAIIKAVYQGAGVAAKNLIPPTMWGYNDDVKDYTYDPEK 358

Query: 362 AQALLREAGFATGLELTM-SVPVEPKAYNPSPRKTAELIQANLADIGVTLRLISEDRSER 420
           A+ALL+EAG   G  + + ++PV+ + YNP+ R+ AE++QA+ A +GV  ++++ +  E 
Sbjct: 359 AKALLKEAGQDKGFTVELWAMPVQ-RPYNPNARRMAEMVQADWAKVGVQAKIVTYEWGEY 417

Query: 421 QELSIRNNIDLYLSGWTGDTGDPDNFLRPLLSCDSNRAGLNVSMWCDSDFDFLLDLALEA 480
            + +        + GWTGD GDPDNF   L SC + + G N S WC   F+ L+  A   
Sbjct: 418 LKRAKAGEHQAVMMGWTGDNGDPDNFFATLFSCAAAKDGSNYSRWCYKPFEDLIQPARAT 477

Query: 481 NKPRYRLNLYHQAQNILNQEFPVIPLAHGIQFTAYSKSLTGIRISPFNVQPFNTV 535
           +    R+ LY QAQ +++ + P + +AH   +    K + G  + P     F  V
Sbjct: 478 DDHNKRIELYKQAQVVMHDQAPALIVAHSTVYEPVRKEVKGYVVDPLGKHHFENV 532