Pairwise Alignments

Query, 540 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 531 a.a., ABC-type dipeptide transport system, periplasmic component from Enterobacter asburiae PDN3

 Score =  367 bits (941), Expect = e-106
 Identities = 194/507 (38%), Positives = 288/507 (56%), Gaps = 2/507 (0%)

Query: 27  SKIRSSGFVYCGESAPTTFNPQLADNDITSDALGPQIYNTLLTIDPETHLPVASLASSWT 86
           S + +   VYC E +P  FNPQL  +  + DA    +YN L+   P T   V SLA  W 
Sbjct: 19  STVAAKTLVYCSEGSPENFNPQLYTSGTSVDASAVPVYNRLVDFKPGTTELVPSLAERWE 78

Query: 87  VNSTGLEYVFKLRPDVAFQTTPWFSPTRPLNADDVVFSFRRIIDPTNPYHKVGQTQYPWF 146
           V+  G  Y F LR  V FQ+   F+PTR  NADDV+FSF R  D  +PYH V    Y  F
Sbjct: 79  VSDDGKVYTFHLRKGVKFQSNKSFTPTRDFNADDVIFSFMRQKDVNHPYHNVSNGSYSNF 138

Query: 147 KGIDFQNLLVDVSALDDLTVKFVLSRPDNSFLSNIATSHAVILSLEYANQLIIDDEKEKL 206
           + ++F +L+  +  +DD TV+F L+ P+  F++++A   A ILS EYA+ ++     EK+
Sbjct: 139 ESLEFGSLITGIDKVDDHTVRFTLAHPEAPFVADLAWYFASILSAEYADAMLKAGTPEKV 198

Query: 207 DNLPLGTGPFYLAEYHPRDLIRLKRHPQYWEGAAKVEQVVFDISQRGTGMLAKLLRNECD 266
           D  P+GTGPF LA+Y     I       YW+G +K++++VF I+   +   AK+ +NEC 
Sbjct: 199 DMEPIGTGPFKLAQYQKDSRILFTAFADYWQGKSKLDRLVFSITPDASVRFAKIEKNECQ 258

Query: 267 VLNAPISSQLPAIEKNPDIVLQTTPAMNVAFIAVNTQHPALNDNRVRKALNFAINRQNIL 326
           V+  P  + LP ++ N DI L +   +N  F+A NTQ P L++ +VR+AL  AIN+  I+
Sbjct: 259 VMPFPNPADLPRMKANKDINLMSKAGLNTGFLAFNTQKPPLDNVKVRQALAMAINKPAII 318

Query: 327 DSVYYGTGSIAFTILPPTSWAYQQDTAQIRYDRNYAQALLREAGFATGLELTM-SVPVEP 385
           D+V++GTG+ A  +LPP  W    +     YD   A+ALL+EAGFA G+ + + ++PV+ 
Sbjct: 319 DAVFHGTGTAAKNLLPPGVWGADSELKDYDYDPEKAKALLKEAGFANGVSVELWAMPVQ- 377

Query: 386 KAYNPSPRKTAELIQANLADIGVTLRLISEDRSERQELSIRNNIDLYLSGWTGDTGDPDN 445
           + YNP+ ++ AE+IQA+ A IGV  ++++ +  E  +          L GWT  TGDPDN
Sbjct: 378 RPYNPNAKRMAEMIQADWAKIGVQTKIVTYEWGEYLKRVKGGEHQAALMGWTTATGDPDN 437

Query: 446 FLRPLLSCDSNRAGLNVSMWCDSDFDFLLDLALEANKPRYRLNLYHQAQNILNQEFPVIP 505
           F  PL +C S   G N + WC   FD ++  A        R+ LY +AQ +++ + P + 
Sbjct: 438 FFGPLFTCTSANGGSNSAKWCYKPFDKIIAEAKSTTDRDKRVALYKEAQQMMHDQMPAVM 497

Query: 506 LAHGIQFTAYSKSLTGIRISPFNVQPF 532
           +AH   F    K +TG  I PF    F
Sbjct: 498 IAHSTIFEPVRKEVTGYEIDPFGKHLF 524