Pairwise Alignments

Query, 540 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 546 a.a., ABC-type oligopeptide transport system, periplasmic component from Enterobacter asburiae PDN3

 Score =  444 bits (1142), Expect = e-129
 Identities = 237/534 (44%), Positives = 320/534 (59%), Gaps = 2/534 (0%)

Query: 7   FTLGLCSMTLLAGCGENIDHSKIRSSGFVYCGESAPTTFNPQLADNDITSDALGPQIYNT 66
           F LGL S +L     E      IR SGFVYC      TFNPQ A + +  D L  Q+Y+ 
Sbjct: 9   FALGLFS-SLAFAAPELTPQPDIRDSGFVYCVSGQVDTFNPQKAGSGLIVDTLAAQLYDR 67

Query: 67  LLTIDPETHLPVASLASSWTVNSTGLEYVFKLRPDVAFQTTPWFSPTRPLNADDVVFSFR 126
           LL +DP T+  V  LA SW V   G  Y F LR DVAFQ TPWF+PTR LNADDVVF+F+
Sbjct: 68  LLDVDPYTYRLVPELAESWEVLDNGATYRFHLRDDVAFQRTPWFTPTRKLNADDVVFTFQ 127

Query: 127 RIIDPTNPYHKVGQTQYPWFKGIDFQNLLVDVSALDDLTVKFVLSRPDNSFLSNIATSHA 186
           RI +  +P+H V    +P+F  + F + +  V  LD+ TV+F L+RPD SFL ++AT +A
Sbjct: 128 RIFNRNHPWHNVNGGNFPYFDSLQFADTIKSVRKLDNRTVEFTLTRPDASFLWHLATHYA 187

Query: 187 VILSLEYANQLIIDDEKEKLDNLPLGTGPFYLAEYHPRDLIRLKRHPQYWEGAAKVEQVV 246
            ++S EYA  L   D +E LD  P+GTGPF LAEY     IRL+RH  +W G   + QVV
Sbjct: 188 SVMSAEYAANLTKKDRQELLDRQPVGTGPFQLAEYRAGQYIRLQRHEHFWRGTPLMPQVV 247

Query: 247 FDISQRGTGMLAKLLRNECDVLNAPISSQLPAIEKNPDIVLQTTPAMNVAFIAVNTQHPA 306
            D+   GTG L+KLL  ECDVL  P +SQL  +  +P + L   P MN+A++A NT  P 
Sbjct: 248 VDLGSGGTGRLSKLLTGECDVLAWPAASQLTILRDDPRLRLTLRPGMNIAYLAFNTDKPP 307

Query: 307 LNDNRVRKALNFAINRQNILDSVYYGTGSIAFTILPPTSWAYQQDTAQIRYDRNYAQALL 366
           LN+  VR AL  AIN Q ++ S+YYGT   A +ILP  SWAY  +     Y+   A+  L
Sbjct: 308 LNNPAVRHALALAINNQRLMQSIYYGTAETAASILPRASWAYDGEAKITEYNPAKAREQL 367

Query: 367 REAGFATGLELTMSVPVEPKAYNPSPRKTAELIQANLADIGVTLRLISEDRSERQELSIR 426
           +  G A  L L + VP   +A+NPSP KTAEL+QA++A +GV + ++  +   ++   + 
Sbjct: 368 KALG-AENLTLQLWVPTSSQAWNPSPLKTAELLQADMAQVGVKVIIVPVEGRFQEARLMD 426

Query: 427 NNIDLYLSGWTGDTGDPDNFLRPLLSCDSNRAGLNVSMWCDSDFDFLLDLALEANKPRYR 486
            N DL L+GW  D+ DPD+F RPLLSC +  +  N + WC+ +FD +L  AL + +   R
Sbjct: 427 MNHDLTLTGWATDSNDPDSFFRPLLSCAAINSQTNYAHWCNREFDAVLQKALASQQLASR 486

Query: 487 LNLYHQAQNILNQEFPVIPLAHGIQFTAYSKSLTGIRISPFNVQPFNTVERVAE 540
           ++ Y +AQ IL QE PV+PLA  ++  AY   + G+ +SPF    F  V R  E
Sbjct: 487 IDAYDEAQKILAQELPVLPLASSLRLQAYRYDIKGLVLSPFGNASFAGVSREKE 540