Pairwise Alignments

Query, 540 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 532 a.a., Periplasmic dipeptide transport protein from Azospirillum sp. SherDot2

 Score =  345 bits (884), Expect = 3e-99
 Identities = 183/504 (36%), Positives = 278/504 (55%), Gaps = 4/504 (0%)

Query: 35  VYCGESAPTTFNPQLADNDITSDALGPQIYNTLLTIDPETHLPVASLASSWTVNSTGLEY 94
           VYC E +P  FNP L     + D   P +YN L+  +      V  LA SWT++  GL Y
Sbjct: 29  VYCSEGSPENFNPMLNTTGTSFDVALP-VYNNLVQFEHGGTKVVPGLAESWTISDDGLVY 87

Query: 95  VFKLRPDVAFQTTPWFSPTRPLNADDVVFSFRRIIDPTNPYHKVGQTQYPWFKGIDFQNL 154
            FKLR    + +   F PTR  NADDV+FSF R   P +P+HK+    Y +F  +    L
Sbjct: 88  TFKLRAGAKWHSVGDFKPTRDANADDVIFSFERQWKPEHPFHKISGGAYDYFNDMAMPKL 147

Query: 155 LVDVSALDDLTVKFVLSRPDNSFLSNIATSHAVILSLEYANQLIIDDEKEKLDNLPLGTG 214
           L  +  +DDLTVKF L+  +  FL+N+A   A I+S EY   L+     EKLD +P+GTG
Sbjct: 148 LKSIEKVDDLTVKFTLNAVEAPFLANLAMPFAPIMSAEYGAMLLKKGTPEKLDQVPVGTG 207

Query: 215 PFYLAEYHPRDLIRLKRHPQYWEGAAKVEQVVFDISQRGTGMLAKLLRNECDVLNAPISS 274
           PF    Y    +IR K   QYW G   ++ +VF I+      LAKL  NEC ++  P  +
Sbjct: 208 PFQFVAYQKDAVIRYKAFEQYWGGKQPLDNLVFAITPDAAVRLAKLKANECQIMPYPNPA 267

Query: 275 QLPAIEKNPDIVLQTTPAMNVAFIAVNTQHPALNDNRVRKALNFAINRQNILDSVYYGTG 334
            +  ++K+  IV+Q    +NV +++ N      +D RVR+A++ A++++  + +VY   G
Sbjct: 268 DIDGMKKDTSIVVQEQEGLNVGYVSFNVTKKPFDDVRVRRAVSMALDKKATVAAVYQAAG 327

Query: 335 SIAFTILPPTSWAYQQDTAQIRYDRNYAQALLREAGFATGLELTM-SVPVEPKAYNPSPR 393
             A   +PPT W+Y        YD   A+ LL +AG+  G E  + ++PV+ + YNP+ +
Sbjct: 328 VPAKNPIPPTMWSYNDAIEDYPYDVERAKKLLADAGYPNGFETDLWAMPVQ-RPYNPNAK 386

Query: 394 KTAELIQANLADIGVTLRLISEDRSERQELSIRNNIDLYLSGWTGDTGDPDNFLRPLLSC 453
           + AE++QA+LA +G+  +++  +  E ++   +    + + GWTGD GDPDNFL  LL C
Sbjct: 387 RVAEMMQADLAKVGIKAKIVQYEWGEYRKRMQQGEHQMGMLGWTGDNGDPDNFLYTLLGC 446

Query: 454 DSNR-AGLNVSMWCDSDFDFLLDLALEANKPRYRLNLYHQAQNILNQEFPVIPLAHGIQF 512
           ++ R  G N+S WC+ +FD L+  A        R  LY QAQ I  +E P   +AH + +
Sbjct: 447 EAARPGGNNLSKWCNKEFDDLVVQAKRTTDIAARTKLYEQAQVIFKEEAPWYTIAHSVVY 506

Query: 513 TAYSKSLTGIRISPFNVQPFNTVE 536
           T  +K++ G ++ PF V  F  V+
Sbjct: 507 TGLAKNVVGYKMDPFGVHRFEGVD 530