Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 474 a.a., sigma-54-dependent Fis family transcriptional regulator from Rhodanobacter sp000427505 FW510-R12

 Score =  213 bits (542), Expect = 8e-60
 Identities = 133/342 (38%), Positives = 189/342 (55%), Gaps = 20/342 (5%)

Query: 6   LGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNCSTL 65
           +G +   L V   + ++AP D  VLV+GE GTGKE++A+ +H  S R ++P V++NC  +
Sbjct: 133 VGNAAPMLRVNALIRQVAPFDSTVLVLGESGTGKEMVARAIHAHSPRRDKPFVAINCGAI 192

Query: 66  SEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIEYGQ 125
              L++SELFGHE GSFTGA    +GRFE AEGGTLFLDE+    L +Q KLLRV++   
Sbjct: 193 PAELLESELFGHEKGSFTGAISARKGRFEMAEGGTLFLDEVGDMSLPMQVKLLRVLQERA 252

Query: 126 YERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPEDIAL 185
           YERVGG++ L  +VR+V AT+ NL +      FR DL  RL+   + LP+LR R +D+ +
Sbjct: 253 YERVGGSKTLRCDVRIVAATHRNLEESIASDRFREDLFYRLSVFPLELPSLRERLDDLPV 312

Query: 186 LAEHFAIRMCRE-LQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVER--AVYQHG---- 238
           L   F  R+ R  L +   V FS +A+  L A++WPGNVREL N+VER   ++ HG    
Sbjct: 313 LIAEFNQRLARRGLGV---VRFSASAMQSLCAHAWPGNVRELSNLVERMAILFPHGEVRS 369

Query: 239 -------LNSQPIDQL---VFNPFQSSDIVTDESEQVDVRHTTRTDFHLPLDYKAWQQQC 288
                     Q +D++           ++   E+    V  T RT     LD K      
Sbjct: 370 SDLPTKYRGQQAVDEVHGAALLALMEDELPPSEAAVQPVAETLRTLPEQGLDLKDHLADI 429

Query: 289 DIELLQAALTQAKFNQKHAAQLLGLSYHQFRGMMRKYPQMNS 330
           ++ L++ AL        HAA+LL +        +RKY   NS
Sbjct: 430 EVGLIRQALDATGGVVAHAARLLHMQRTTLVEKLRKYGLQNS 471