Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 459 a.a., nitrogen regulation protein NR(I) from Rhodanobacter sp000427505 FW510-R12

 Score =  214 bits (544), Expect = 4e-60
 Identities = 138/315 (43%), Positives = 182/315 (57%), Gaps = 13/315 (4%)

Query: 4   SLLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNCS 63
           +LLGES     V   + R+A  D  VLV GE GTGKEL+A+ LH  S R ++P V+LN +
Sbjct: 136 ALLGESAPMREVFRLIGRVAASDLNVLVTGETGTGKELVARALHEESARRDKPFVALNTA 195

Query: 64  TLSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIEY 123
            +   L++SELFGHE+G+FTGA  R  GRFE+AEGGTLFLDE+   PL +Q +LLRV+  
Sbjct: 196 AIPSELLESELFGHEAGAFTGATRRVAGRFEQAEGGTLFLDEIGDMPLILQTRLLRVLAG 255

Query: 124 GQYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPEDI 183
           G++ RVGG +++  NVR+V AT+ +L      G FRADL+ RL    IHLPALR R  DI
Sbjct: 256 GEFYRVGGRELIRCNVRIVAATHQDLAARVAAGAFRADLMHRLDVVRIHLPALRERRNDI 315

Query: 184 ALLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVER-AVYQHGLNSQ 242
            LLA HF     +EL+LP    +S  AL  +    +PGNVREL+N+  R AV   G    
Sbjct: 316 PLLARHFLAAAAQELKLPP-KRYSKAALKLVAQRDYPGNVRELENLCRRLAVIAPGSEIL 374

Query: 243 PIDQLVFNPFQSSDIVTDESEQVDVRH----TTRTDFHLPLDYKAWQQQCDIELLQAALT 298
           P D        SS       E  D           D    +  +A +   D  LLQAAL 
Sbjct: 375 PTD------LGSSAEAARGGEWTDALREWAAQALADGEADIHARA-RAALDQTLLQAALQ 427

Query: 299 QAKFNQKHAAQLLGL 313
             + ++++AAQ LG+
Sbjct: 428 AHEGHRQNAAQALGV 442