Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 480 a.a., DNA-binding transcriptional regulator NtrC from Xanthobacter sp. DMC5

 Score =  218 bits (555), Expect = 2e-61
 Identities = 137/335 (40%), Positives = 188/335 (56%), Gaps = 21/335 (6%)

Query: 5   LLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNCST 64
           L+G SPA   +   ++RL   D  V++ GE GTGKEL+A+ LH   KR   P V++N + 
Sbjct: 140 LVGRSPAMQEIYRLLARLMQTDLTVMIAGESGTGKELVARALHDYGKRRTGPFVAINMAA 199

Query: 65  LSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIEYG 124
           +   LI+SELFGHE GSFTGA  R+ GRFE+AEGGTLFLDE+   P+  Q +LLRV++ G
Sbjct: 200 IPRDLIESELFGHEKGSFTGATTRNPGRFEQAEGGTLFLDEIGDMPMEAQTRLLRVLQQG 259

Query: 125 QYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPEDIA 184
           +Y  VGG   +  +VR++ ATN +L  + QQG FR DL  RL    + LP LR R ED+ 
Sbjct: 260 EYTTVGGRTPIKTDVRIIAATNKDLRTLIQQGLFREDLFFRLNVVPLRLPPLRERSEDVP 319

Query: 185 LLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVER--AVY-QHGLNS 241
            L  HF ++  RE  LP        AL +L+ Y WPGNVREL+N+V R  A+Y Q  +  
Sbjct: 320 DLVRHFFLQAERE-GLPA-KQIDSAALDRLKRYRWPGNVRELENLVRRLAALYPQEVITP 377

Query: 242 QPIDQLVFNPFQSSDIVTDESEQVDVRHTTRTDFHLPLDYKAWQQQC-----------DI 290
             I+  +  P  +   +  E   VD       + HL   +  + +             D+
Sbjct: 378 AIIEAELSEPMPN---MLSEEGPVDATLAASVERHLNTYFSGFGENLPPPGLYHRILKDV 434

Query: 291 E--LLQAALTQAKFNQKHAAQLLGLSYHQFRGMMR 323
           E  LL AAL   + NQ  AA+LLGL+ +  R  +R
Sbjct: 435 EYPLLSAALAATRGNQIKAAELLGLNRNTLRKKIR 469