Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  207 bits (528), Expect = 3e-58
 Identities = 109/232 (46%), Positives = 150/232 (64%), Gaps = 2/232 (0%)

Query: 3   QSLLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNC 62
           +SL+G+S     V   + +++  +  VL++GE GTGKE++A+ +HY S R   P V +NC
Sbjct: 135 RSLVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVVARNIHYHSGRRNGPFVPINC 194

Query: 63  STLSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIE 122
             +   L++SELFGHE G+FTGA    +GRFE AEGGTLFLDE+   P+S+Q KLLRV++
Sbjct: 195 GAIPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQ 254

Query: 123 YGQYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPED 182
              +ERVGGN  + ANVR++ AT+ NL +M     FR DL  RL    I +PALR R +D
Sbjct: 255 ERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLYYRLNVFPIEMPALRDRIDD 314

Query: 183 IALLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVERAV 234
           I LL +    RM  E   P  + F+P A++ +  + WPGNVREL N+VER V
Sbjct: 315 IPLLLQELMTRMEAEGAQP--ICFTPRAINSMMEHDWPGNVRELANLVERMV 364