Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 448 a.a., Alginate biosynthesis transcriptional regulatory protein AlgB from Pseudomonas putida KT2440

 Score =  206 bits (525), Expect = 7e-58
 Identities = 111/232 (47%), Positives = 149/232 (64%), Gaps = 1/232 (0%)

Query: 2   QQSLLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLN 61
           +  L   SPA +AVL+   ++A  D  +L++GE GTGK  +A+ +H  SKR  +  V++N
Sbjct: 144 KDGLDSHSPAMMAVLETARQVAITDANILILGESGTGKGELARAIHGWSKRARKACVTIN 203

Query: 62  CSTLSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVI 121
           C +L+  L++SELFGH  G+FTGA     GR  +A+GGTLFLDE+   PL++Q KLLR I
Sbjct: 204 CPSLNAELMESELFGHTRGAFTGASESTLGRVSQADGGTLFLDEIGDFPLTLQPKLLRFI 263

Query: 122 EYGQYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPE 181
           +  +YERVG      A+VR++ ATN NL +M ++  FR DLL RL    +HLP LR R E
Sbjct: 264 QDKEYERVGDPVTRRADVRILAATNLNLEEMVRESRFREDLLYRLNVITLHLPPLRERSE 323

Query: 182 DIALLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVERA 233
           DI +LA+ F  R  +E   P   GFS  A   L  Y WPGN+REL+NVVERA
Sbjct: 324 DILILADRFLARFVKEYSRPA-RGFSDEARTALLNYRWPGNIRELRNVVERA 374