Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein (NCBI) from Escherichia coli BW25113

 Score =  217 bits (552), Expect = 5e-61
 Identities = 113/233 (48%), Positives = 155/233 (66%), Gaps = 1/233 (0%)

Query: 2   QQSLLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLN 61
           Q  ++G+SPA   +L +++ +AP +  VL+ G+ GTGKEL+A+ +H  S R E+PLV+LN
Sbjct: 138 QFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLN 197

Query: 62  CSTLSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVI 121
           C+ L+E L++SELFGHE G+FTGA  R +GRF  A+GGTLFLDE+      +Q +LLR I
Sbjct: 198 CAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAI 257

Query: 122 EYGQYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPE 181
           +  + +RVG NQ+++ +VRL+ AT+ +L      G FR DL  RL    I +P+LR R E
Sbjct: 258 QEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRRE 317

Query: 182 DIALLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVERAV 234
           DI LLA HF  R   E       GF+P A+  L  Y WPGN+REL+N VERAV
Sbjct: 318 DIPLLAGHFLQRFA-ERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAV 369