Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 692 a.a., DNA-binding transcriptional activator (NCBI) from Escherichia coli BW25113

 Score =  210 bits (534), Expect = 1e-58
 Identities = 109/230 (47%), Positives = 151/230 (65%), Gaps = 1/230 (0%)

Query: 5   LLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNCST 64
           ++G S A  +VL +V  +A  D  VL++GE GTGKELIA+ +H LS R  + +V +NC+ 
Sbjct: 381 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 440

Query: 65  LSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIEYG 124
           +  GL++S+LFGHE G+FTGA  +  GRFE A+  +LFLDE+   PL +Q KLLRV++  
Sbjct: 441 MPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQ 500

Query: 125 QYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPEDIA 184
           ++ER+G N+++  +VRL+ ATN +L +M     FR+DL  RL    IHLP LR RPEDI 
Sbjct: 501 EFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIP 560

Query: 185 LLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVERAV 234
           LLA+ F  ++ R L   +        L  L    WPGNVREL+NV+ERAV
Sbjct: 561 LLAKAFTFKIARRLGRNI-DSIPAETLRTLSNMEWPGNVRELENVIERAV 609