Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 690 a.a., Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains from Enterobacter asburiae PDN3

 Score =  205 bits (522), Expect = 2e-57
 Identities = 106/230 (46%), Positives = 150/230 (65%), Gaps = 1/230 (0%)

Query: 5   LLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNCST 64
           ++G S A  +VL +V  +A  D  VL++GE GTGKELIA+ +H LS R  + +V +NC+ 
Sbjct: 381 IIGRSDAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSNRNSRRMVKMNCAA 440

Query: 65  LSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIEYG 124
           +  GL++S+LFGHE G+FTGA  +  GRFE A+  +LFLDE+   PL +Q KLLRV++  
Sbjct: 441 MPAGLLESDLFGHERGAFTGASSQRLGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQ 500

Query: 125 QYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPEDIA 184
           ++ER+G N+++  +VRL+ ATN +L +M     FR+DL  RL    I LP LR RPEDI 
Sbjct: 501 EFERLGSNKLIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIFLPPLRERPEDIP 560

Query: 185 LLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVERAV 234
           LL + F  ++ R +   +        L  L +  WPGNVREL+NV+ERAV
Sbjct: 561 LLVKAFTAKIARRMGRNI-DSIPAETLRTLSSMEWPGNVRELENVIERAV 609