Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 670 a.a., DNA-binding transcriptional regulator HyfR from Escherichia coli ECRC62

 Score =  221 bits (564), Expect = 3e-62
 Identities = 113/230 (49%), Positives = 157/230 (68%), Gaps = 1/230 (0%)

Query: 5   LLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNCST 64
           ++ +S A   +L +V  +A  D  VL+ GE GTGKE+IA+ +H LS R ++PLV +NC+ 
Sbjct: 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406

Query: 65  LSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIEYG 124
           +   L++SELFGH+ G+FTGA   H+GRFE A+GGTLFLDE+   PL +Q KLLRV++  
Sbjct: 407 IPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQER 466

Query: 125 QYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPEDIA 184
           + ER+GG++ +  NVR++ ATN +L QM +   FR+DL  RL    + LP LR RPEDI 
Sbjct: 467 EIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIP 526

Query: 185 LLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVERAV 234
           LLA+HF  +M R +   +       AL QL ++ WPGNVREL+NV+ERAV
Sbjct: 527 LLAKHFTQKMARHMNRSI-DAIPTEALRQLMSWDWPGNVRELENVIERAV 575