Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., sigma-54-dependent response regulator transcription factor ZraR from Escherichia coli ECRC62

 Score =  214 bits (545), Expect = 3e-60
 Identities = 112/233 (48%), Positives = 153/233 (65%), Gaps = 1/233 (0%)

Query: 2   QQSLLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLN 61
           Q  ++G+SPA   +L +++ +AP +  VL+ G+ GTGKEL+A+ +H  S R E+PLV+LN
Sbjct: 138 QFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLN 197

Query: 62  CSTLSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVI 121
           C+ L+E L++SELFGHE G+FTGA  R +GRF  A+GGTLFLDE+      +Q +LLR I
Sbjct: 198 CAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAI 257

Query: 122 EYGQYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPE 181
           +  + +RVG NQ ++ +VRL+ AT+ +L      G FR DL  RL    I +P+LR R E
Sbjct: 258 QEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRRE 317

Query: 182 DIALLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVERAV 234
           DI LL  HF  R   E       GF+P A+  L  Y WPGN+REL+N VERAV
Sbjct: 318 DIPLLVGHFLQRFA-ERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAV 369