Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 461 a.a., fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein from Escherichia coli BL21

 Score =  225 bits (574), Expect = 1e-63
 Identities = 131/323 (40%), Positives = 196/323 (60%), Gaps = 15/323 (4%)

Query: 5   LLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNCST 64
           +L  SPA + +    +++A     VL+ GE GTGKELIA+ +HY S+R + P + +NC+ 
Sbjct: 145 ILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAA 204

Query: 65  LSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIEYG 124
           L E L++SELFGHE G+FTGA+   QG FERA  GTL LDE+   PL +Q KLLR+++  
Sbjct: 205 LPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQER 264

Query: 125 QYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIH--LPALRHRPED 182
           ++ER+GG+Q +  ++R++ ATN +L  M ++GTFR DL  RL  +VIH  LP LR R ED
Sbjct: 265 EFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRL--NVIHLILPPLRDRRED 322

Query: 183 IALLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVERAVYQHGLNSQ 242
           I+LLA HF  +   E Q  + +   P A+  L A+SWPGN+REL NV+ERAV    +NS 
Sbjct: 323 ISLLANHFLQKFSSENQRDI-IDIDPMAMSLLTAWSWPGNIRELSNVIERAVV---MNSG 378

Query: 243 PIDQLVFNPFQSSDIVTDESEQVDVRHTTRTDFHLPLDYKAWQQQCDIELLQAALTQAKF 302
           PI   +F+      I        +V+     + +L  + K  +++  +E+L+    Q + 
Sbjct: 379 PI---IFSEDLPPQIRQPVCNAGEVKTAPVGERNLKEEIKRVEKRIIMEVLE----QQEG 431

Query: 303 NQKHAAQLLGLSYHQFRGMMRKY 325
           N+   A +LG+S       +++Y
Sbjct: 432 NRTRTALMLGISRRALMYKLQEY 454