Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 481 a.a., DNA-binding transcriptional regulator NtrC from Azospirillum sp. SherDot2

 Score =  206 bits (524), Expect = 1e-57
 Identities = 131/337 (38%), Positives = 186/337 (55%), Gaps = 19/337 (5%)

Query: 2   QQSLLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLN 61
           Q  L+G SPA   +   ++RL   D  V++ GE GTGKEL+A+ LH   KR     V++N
Sbjct: 138 QLPLIGRSPAMQEIYRVLARLMGTDLTVMITGESGTGKELVARALHDYGKRRNGAFVAIN 197

Query: 62  CSTLSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVI 121
            + +   LI+SELFGHE G+FTGA  R  GRFE+A+GGTLFLDE+   PL  Q +LLRV+
Sbjct: 198 MAAIPRELIESELFGHEKGAFTGATNRSTGRFEQAQGGTLFLDEIGDMPLDAQTRLLRVL 257

Query: 122 EYGQYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPE 181
           + G+Y  VGG   +  +VR++ AT+ +L  + +QG FR DL  RL    I LP LR R E
Sbjct: 258 QEGEYTTVGGRTAIKTDVRIIAATHRDLRTLIRQGLFREDLFYRLCVVPIRLPPLRERTE 317

Query: 182 DIALLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVER--AVYQHGL 239
           DI LL  HF + +     LP        A+ +L+ Y WPGNVREL+N+V R  A+Y   +
Sbjct: 318 DIPLLVRHF-LNLGISQGLPA-KSIDQAAMDRLKRYRWPGNVRELENLVRRLAALYSQEV 375

Query: 240 -----------NSQPIDQLVFNPFQSSDIVTDESEQVDVRHTTRTDFHLPLD--YKAWQQ 286
                      ++ P  Q V  P QS  + +     +        D  +P +  Y    +
Sbjct: 376 IGLDVVEAELADATPAAQPVEEP-QSEGLSSAVERHLKDYFAAHKD-GMPSNGLYDRVLR 433

Query: 287 QCDIELLQAALTQAKFNQKHAAQLLGLSYHQFRGMMR 323
           + +  L+  +L+  + NQ  AAQLLGL+ +  R  +R
Sbjct: 434 EIERPLISLSLSATRGNQIKAAQLLGLNRNTLRKKIR 470