Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 565 a.a., Nif-specific regulatory protein from Alteromonas macleodii MIT1002

 Score =  204 bits (519), Expect = 4e-57
 Identities = 125/333 (37%), Positives = 186/333 (55%), Gaps = 20/333 (6%)

Query: 6   LGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNCSTL 65
           +G+S ++     K+ + A     VL++GE G GKE+IA+ +H  SKR EQP +++NC+ +
Sbjct: 236 IGQSASYKEACMKIDKAAQGKVSVLLLGETGVGKEVIARSVHLRSKRAEQPFIAVNCAAI 295

Query: 66  SEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIEYGQ 125
            + LI++ELFG E G+FTGA     GRFERA+ GT+FLDE+       Q  LLRV++  +
Sbjct: 296 PQDLIEAELFGVEKGAFTGATQSRAGRFERADKGTIFLDEVVELTPRAQASLLRVLQEQE 355

Query: 126 YERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPEDIAL 185
            ERVGG+Q+ N NVR++ ATN +L Q    G FRADL  RL+   + +P LR R +DI L
Sbjct: 356 LERVGGSQIHNVNVRVIAATNESLEQAVNNGKFRADLYYRLSVFPVKIPPLRDRIDDIPL 415

Query: 186 LAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVERAVYQHGLN----- 240
           L EHF ++   +      +G S  A   L  YSWPGN+REL+NV+ER V     N     
Sbjct: 416 LVEHF-LQKFHDDYSKRTLGLSDKAWDYLSKYSWPGNIRELENVIERGVILTDSNETISV 474

Query: 241 ----SQPIDQLVFNP----FQSSDIVTDESEQVDVRHTTRTDFHLPLDYKAWQQQCDIEL 292
               S  I+QL  N     + +  +V    ++ D       +  + LD        +  L
Sbjct: 475 DSLFSSTIEQLQTNSEDHVYSNGAVVKTSEKEKDNWIDEILEREISLD------AVEKIL 528

Query: 293 LQAALTQAKFNQKHAAQLLGLSYHQFRGMMRKY 325
            ++A+ +AK N   AA+LLG++       ++K+
Sbjct: 529 TESAMAKAKDNISKAARLLGVTRPALAYRLKKH 561