Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 373 a.a., Phage shock protein F from Alteromonas macleodii MIT1002

 Score =  348 bits (893), Expect = e-100
 Identities = 181/364 (49%), Positives = 242/364 (66%), Gaps = 31/364 (8%)

Query: 2   QQSLLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLN 61
           Q +LLG+S +FL VL+++S++AP+D+PVLVIGERGTGKELIA RLH+LSKRW+Q  + LN
Sbjct: 7   QDNLLGQSNSFLEVLEQISQIAPLDKPVLVIGERGTGKELIAARLHFLSKRWDQNYIKLN 66

Query: 62  CSTLSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVI 121
           C+ LSE L++SELFG+E+G+FTGA  R +GRFE A  GTLFLDELA     +QEKLLRV+
Sbjct: 67  CAALSESLLESELFGYEAGAFTGASKRREGRFEVAHNGTLFLDELANTSGLIQEKLLRVV 126

Query: 122 EYGQYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPE 181
           EYG++ERVGG++ +  +VRL+ ATN +LP +A  G FRADLLDRLAFDVI +P LR R E
Sbjct: 127 EYGEFERVGGSKSVKTDVRLIAATNEDLPALADAGEFRADLLDRLAFDVITIPPLRERRE 186

Query: 182 DIALLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVERAVYQHGLNS 241
           DI +LAE+FAI M RE+++ LF GF+  A   L  Y WPGN+RELKNVVERAVY+     
Sbjct: 187 DIMMLAENFAINMAREMEMELFSGFTEKAKRTLLDYDWPGNIRELKNVVERAVYRTNNPH 246

Query: 242 QPIDQLVFNPFQS------------------SDIVTDESEQVDVRHTTRTD--------- 274
            P+ ++V +PF+S                  S +    SE         +          
Sbjct: 247 LPVHEIVLDPFESAYRPKGRVKTNDRVNTPDSPVTQSPSEAAATNERIESADITPLAPVK 306

Query: 275 ----FHLPLDYKAWQQQCDIELLQAALTQAKFNQKHAAQLLGLSYHQFRGMMRKYPQMNS 330
                  P+D K   QQ +I++++ AL  ++FNQK  A+ L L+YHQ RG ++KY  ++S
Sbjct: 307 KPEIVEYPIDLKERSQQHEIDMIKQALADSQFNQKKTAEKLSLTYHQLRGYLKKYNLLDS 366

Query: 331 ENAS 334
              S
Sbjct: 367 SAES 370