Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 513 a.a., sigma 54 dependent transcriptional activator from Agrobacterium fabrum C58

 Score =  205 bits (521), Expect = 2e-57
 Identities = 108/230 (46%), Positives = 144/230 (62%)

Query: 5   LLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNCST 64
           ++  SPA L V++   R A    PV++ GE G GKE++A+ +     R  +P +++NC  
Sbjct: 145 IVSASPAMLRVIELAQRAAQSSIPVVLEGESGVGKEMVARAIQSGGDRANKPFITVNCGA 204

Query: 65  LSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIEYG 124
           +   L++S LFGHE G+FTGA  +H G+F  A+GGTLFLDE+   PL VQ KLLR ++ G
Sbjct: 205 IPHNLVESILFGHEKGAFTGATEKHVGKFMEADGGTLFLDEIGDLPLDVQVKLLRAVQQG 264

Query: 125 QYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPEDIA 184
           + E VG  +V   NVRL+ ATN NL +  ++G FR DL  RL    I +PALR R EDI 
Sbjct: 265 EIETVGSARVQKVNVRLISATNKNLIEEVKEGRFREDLYYRLNVFPITIPALRRRKEDIP 324

Query: 185 LLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVERAV 234
            LA  FA R   E +LP  VG   +AL  L AY WPGN+R+L+N V RAV
Sbjct: 325 HLARVFAERFSAEQKLPNPVGLDASALALLTAYDWPGNIRQLENAVFRAV 374