Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., DNA-binding transcriptional regulator NtrC from Acinetobacter radioresistens SK82

 Score =  212 bits (539), Expect = 2e-59
 Identities = 135/358 (37%), Positives = 191/358 (53%), Gaps = 36/358 (10%)

Query: 5   LLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNCST 64
           ++GESPA   V   + RL      VL+ GE GTGKEL+A  LH  S R  +P ++LN + 
Sbjct: 141 IIGESPAMQEVFRAIGRLTQSHITVLINGESGTGKELVAHALHKHSPRKNKPFIALNMAA 200

Query: 65  LSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIEYG 124
           + + LI++ELFGHE G+FTGA  + QGRFE+A GGTLFLDE+   P   Q +LLRV+  G
Sbjct: 201 IPKDLIETELFGHEKGAFTGANSQRQGRFEQANGGTLFLDEIGDMPFETQTRLLRVLADG 260

Query: 125 QYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPEDIA 184
           ++ RVGG+  +  +VR+V AT+ +L ++   G FR DL  RL    IH+P L HR EDI 
Sbjct: 261 EFYRVGGHISVKVDVRIVTATHQDLEKLVHDGRFREDLFHRLNVIRIHIPKLAHRSEDIP 320

Query: 185 LLAEHFAIRMCRELQLPLFVGFSPNALHQ-----LQAYSWPGNVRELKN--------VVE 231
           +LA+HF  R  +EL      G SP  L Q     +Q   WPGNVR+L+N        +  
Sbjct: 321 MLAQHFLARAGKEL------GVSPKILRQETVQYMQQLPWPGNVRQLENTCRWLTVMITG 374

Query: 232 RAVYQHGLNSQ----PIDQLVFNPFQSSDIVTDESEQVD-------VRHTTRTDFHLPLD 280
           R +Y   L  +    PI +       S  I    S+Q D       ++     +  + LD
Sbjct: 375 REIYPEDLPPELKQIPIQRAEDASISSPSIQRASSQQWDELLGQWAIQKLQNGEMKI-LD 433

Query: 281 YKAWQQQCDIELLQAALTQAKFNQKHAAQLLGLSYHQFRGMMRKYPQMNSENASPHVE 338
                   +  L+QAAL Q +  ++HAA+LLG   +    + RK  ++    A   +E
Sbjct: 434 IAT--PLFERTLIQAALQQTRGRKRHAAELLGWGRNT---LTRKLKELGMSTADDEIE 486