Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 410 a.a., Multidrug resistance protein MdtE from Xanthobacter sp. DMC5

 Score = 87.0 bits (214), Expect = 7e-22
 Identities = 96/351 (27%), Positives = 149/351 (42%), Gaps = 33/351 (9%)

Query: 14  LLVGCGKELP------PVPEPDS--RPAKLTTVSVGNNTFSRQFPATTAAGDRAVLAFRV 65
           LL GCG+E P      P  +  +  RP ++TTVS       + F     A     LAFRV
Sbjct: 28  LLAGCGQENPANAGEAPASKEATLARPVQVTTVSFRPRQTQKSFVGVVRARREIDLAFRV 87

Query: 66  PGQLQTIDVLAGQEVKKGEVLARLNPDEYAL-LE------QQASANFQLADVQFQRAQRL 118
            G++    V  G  ++ G V+ARL+ ++  L LE      Q A+AN      +  R + L
Sbjct: 88  GGKVVQRLVEVGDRIEPGTVVARLDKEDLKLELESAKAEMQAATANLAQTTTEDTRYRAL 147

Query: 119 RQDKVVSEQDFD-------QAQANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQY 171
                 S  D D       +A      AK + E A+  L Y  L+    G +    AE  
Sbjct: 148 TAKGAASNADLDRKSLAKEEAVGRLERAKRSLELAENRLSYADLVTDAAGVVVATSAEPG 207

Query: 172 EYVAAKQGVMNIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQFQEIDT 231
           + VA+ Q ++ +      +    LP+  L        +A +   + P R+ P   +E+  
Sbjct: 208 QVVASGQTIVRVARLDEKEALVSLPETAL--ADARTADAVVTLWADPGRRIPAHLRELSP 265

Query: 232 EADSKTRSYKVTMVMERPNDVGILPGMAGRVSLMAPSGSATV--IPTSALFAEQGGKYVW 289
           +AD  +R+Y     +E   D  +  GM   V+L  P     V  +P SAL     G  V+
Sbjct: 266 QADVTSRTYPARFSLEGA-DGTVALGMTATVTL-RPKDQQQVARLPLSALIDRGHGPQVF 323

Query: 290 RVDDA--GLVSK---AAVTLNEQRQVLTGLNDGDRIIISGVSGVTEGIKVR 335
            VD A   +V++    A    ++  +  G+  GD ++I GV  +  G KVR
Sbjct: 324 VVDGATHAIVARPVEIAAYTGDEVLLSGGVAPGDAVVILGVQTLLPGQKVR 374