Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 376 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  106 bits (264), Expect = 1e-27
 Identities = 77/291 (26%), Positives = 142/291 (48%), Gaps = 17/291 (5%)

Query: 61  LAFRVPGQLQTIDVLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQFQRAQRLRQ 120
           L+  + G ++ +   +GQ+VK G+ L +L+    + L + A A+  LA + + R  +L  
Sbjct: 72  LSLEIAGTVKDVQFESGQKVKTGQPLVQLDSAVESALLETAQADLGLAQLDYGRGSQLVG 131

Query: 121 DKVVSEQDFDQAQANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQYEYVAAKQGV 180
            + +S+ +FD+  A     KAT  Q KA+L    ++AP+ GTI +   +  +Y+A+   +
Sbjct: 132 SQAISKGEFDRLSAQLQKNKATVNQLKASLAKKHIVAPFGGTIGIRQVDVGDYLASGTVI 191

Query: 181 MNIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQFQEIDTEADSKTRSY 240
             +Q    L V F +P+H + + +  G    +   ++P  Q+P     I+ + ++ TR+ 
Sbjct: 192 ATLQDLSSLYVDFYIPEHAVPKVA-PGQPVQVEVSAYPGEQFPGSISAINPKVENSTRNV 250

Query: 241 KVTMVMERPNDVGILPGMAGRVSLMAPS-GSATVIPTSALFAEQGGKYVWRV----DDAG 295
            V   +  P +  +LPGM  R+ ++ P+     V+P  A+     G  V+ V     + G
Sbjct: 251 LVRATLANP-EGKLLPGMFTRLDVLLPNPAPQIVVPEGAITYTLYGNSVYAVAEKKTEGG 309

Query: 296 LVSKAA----VTLNEQRQVLTGLNDGDRIIISGVSGVTEGIKVREWVKERG 342
            V K A    + + E+R V TG   G  +++S      +G+K  E V   G
Sbjct: 310 EVEKDADGKPLLIAERRFVETGERRGGLVLVS------KGLKAGEQVVSAG 354