Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 356 a.a., RND transporter from Pseudomonas simiae WCS417

 Score = 99.8 bits (247), Expect = 1e-25
 Identities = 106/359 (29%), Positives = 158/359 (44%), Gaps = 37/359 (10%)

Query: 3   KTLLAFSICSTLLVGCGKELPPVPEPDSRPAKLTTVSVGNNTFSRQFPATTAAGDRAVLA 62
           K L      S LLV C KE  P PEP  RP     V   +     +F  T  A   + L 
Sbjct: 2   KRLTGILAASLLLVACSKEDAP-PEP-VRPVLSMEVKAEDQENLGRFAGTIQARYESNLG 59

Query: 63  FRVPGQLQTIDVLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQFQ--------- 113
           FRVPG++    V  G EV+KG +LA L+P +     Q  SA   LA VQ Q         
Sbjct: 60  FRVPGRIARRVVDVGAEVEKGALLAVLDPTDQQ--NQLRSAQGDLARVQAQYINAQANAR 117

Query: 114 RAQRLRQDKVVSEQDFDQAQANHNSAKATWEQAKAN-------LRYTQLIAPYDGTISLI 166
           R Q L    V ++   D AQ +  + +AT +QAKA+       LRY +L   + G ++  
Sbjct: 118 RQQELFNRGVGAQAQLDIAQTDLKTTQATLDQAKASVNQANDQLRYAELRTDHAGIVTAW 177

Query: 167 PAEQYEYVAAKQGVMNIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQF 226
            AE  + V+A Q V+ +    + +    LP  L  R   D V   +     P+       
Sbjct: 178 NAEAGQVVSAGQQVVTLARPDIKEAVIDLPAGLAERLPPD-VVFLVAGQLDPSVNTTAIV 236

Query: 227 QEIDTEADSKTRSYKVTMVM-ERPNDVGILPGMAGRVSLMAPSGSATVIPTSALFAEQGG 285
           +EI+ +A S TR+ +  + + E P    +  G A  V+L         +P SAL    G 
Sbjct: 237 REIEPQAQSATRTRRARLTLTETPPAFRL--GTAISVTLSTAIAPRIEVPLSALQEVDGK 294

Query: 286 KYVWRVD---------DAGLVSKAAVTLNEQRQVLTGLNDGDRIIISGVSGVTEGIKVR 335
             +W +D         D  ++S+ A    +   +  G+  G+RI+I+GV+ +  G KV+
Sbjct: 295 TRIWLLDTHSQTVQTRDISVISRDA----DSALLNDGVKPGERIVIAGVNSLKPGQKVK 349