Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  106 bits (264), Expect = 1e-27
 Identities = 96/356 (26%), Positives = 155/356 (43%), Gaps = 26/356 (7%)

Query: 1   MNKTLLAFSICSTL---LVGCGKELPPVPEPDSRPAKLTTVSVGNNTFSRQFPATTAAGD 57
           M  T L F++  +L   L GCG E     +   RPA +      + +    +P    A  
Sbjct: 1   MRSTFLPFALPVSLVFLLAGCGHE--EAAQTTIRPAMVVQPQPSSQSMD-SYPGEVRARY 57

Query: 58  RAVLAFRVPGQLQTIDVLAGQEVKKGEVLARLNPDEYALLEQQ-------ASANFQLADV 110
              LAFR+ G++    V  G+ VK  + LA L+P +  L  +        A AN  L   
Sbjct: 58  EPDLAFRIGGKVSKRLVEEGERVKANQALAELDPQDVRLQLEATRAQVAGAEANLSLVRA 117

Query: 111 QFQRAQRLRQDKVVSEQDFDQAQANHNSAKATWEQAKANLR-------YTQLIAPYDGTI 163
           +  R + L   ++VS   +D ++  + +  A  +Q KA          Y  L AP DG +
Sbjct: 118 ERDRYKTLMDRQMVSRSQYDNSENLYRAGVARLKQIKAEFDVASNQAGYAVLRAPQDGVV 177

Query: 164 SLIPAEQYEYVAAKQGVMNIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFDSFPNRQYP 223
           +    E  + V+A Q V  + T+   +V   LP+    RF + G    +   S P++++ 
Sbjct: 178 AKRVVEVGQVVSAGQTVFTLATDGEREVLISLPEQGFGRF-KIGQPVSVELWSQPDQRFT 236

Query: 224 LQFQEIDTEADSKTRSYKVTMVMERPNDVGILPGMAGRVSLMAPSGSATVIPTSALFAEQ 283
            + +E+   AD K+R++   +          L G + RV +         +P SAL AE 
Sbjct: 237 GRIRELSPAADPKSRTFAARVAFTGGKVPAEL-GQSARVFIQVDGDIPLSVPLSALSAEN 295

Query: 284 GGKYVWRVDDAGLVSKAAVTL----NEQRQVLTGLNDGDRIIISGVSGVTEGIKVR 335
           G  YVWRV     + +  V +     +   VL GL+  D +I +GV  + EG +VR
Sbjct: 296 GASYVWRVQPDNTLKRTPVRIGAFGEKTVPVLEGLSPTDWVIAAGVHVLHEGQQVR 351