Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 403 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  105 bits (263), Expect = 2e-27
 Identities = 94/339 (27%), Positives = 151/339 (44%), Gaps = 30/339 (8%)

Query: 12  STLLVGCGKELPPVPEPDSRPAKLTTVSVGNNTFSRQFPATTAAGDRAVLAFRVPGQLQT 71
           +  LVGC  +  P  +   R  K  TV         +F A   A   + L FRV G++  
Sbjct: 21  AVFLVGCSPK--PAAQDPVRAVKFVTVGASEFDAQPEFSAEVRARVESRLGFRVAGKITR 78

Query: 72  IDVLAGQEVKKGEVLARLNPDEYALLEQQASA-------NFQLADVQFQRAQRLRQDKVV 124
                GQ V+ G+VLA+L+P +Y L  + A A       N  LA    +R + LR+   +
Sbjct: 79  RQAELGQHVQAGQVLAQLDPQDYRLAAEAARAQQAAALTNRDLAAADLKRYRELREQNFI 138

Query: 125 SEQDFDQAQANHNSAKATWEQAKANL-------RYTQLIAPYDGTISLIPAEQYEYVAAK 177
           S  + ++ +    +A+A  EQA+A L        YT L+A   G I+ I AE  + V A 
Sbjct: 139 SGAELERRETTWKAAQAQLEQAQAQLSSQGNQANYTTLVADVAGIITAIEAEPGQVVQAG 198

Query: 178 QGVMNIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQFQEIDTEADSKT 237
             V+ I  +    V F +P+                +      +   Q +E+   AD+ T
Sbjct: 199 TPVVRIAQDGARDVVFAVPEDRATLVKTGSPVTVRGWSG--GNELQGQVREVAASADAVT 256

Query: 238 RSYKVTMVMERPNDVGILPGMAGRVSLMAPSGSATV-IPTSALFAEQGGKYVWRVDDAGL 296
           R+Y + + ++      +   +  R   +A +G+  + +PTSAL  E  G  VW +D    
Sbjct: 257 RTYSIKVAIDAATAPPLGATVYARPQALAHAGATVLKLPTSALRQEGKGSAVWVLD---- 312

Query: 297 VSKAAVTLNEQR-QVLTGLNDGDRIIISGVSGVTEGIKV 334
             K+ +T+  Q  QV T   DG+  +I+  SG+T G+ V
Sbjct: 313 --KSTMTVRSQAVQVATA--DGNEAVIA--SGITPGMMV 345