Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 416 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  105 bits (263), Expect = 2e-27
 Identities = 91/341 (26%), Positives = 154/341 (45%), Gaps = 35/341 (10%)

Query: 28  PDSRPAKLTTVSVGNNTFSRQFPATTAAGDRAVLAFRVPGQLQTIDVLAGQEVKKGEVLA 87
           P + P  + TV+        +F     A +R  +  RV G +Q +    G  VK+G++L 
Sbjct: 50  PQATPVSVATVASSEINAWDEFSGRLEAVERVDVRSRVAGAVQAVHFREGALVKQGDLLV 109

Query: 88  RLNPDEYALLEQQASANFQLADV-------QFQRAQRLRQDKVVSEQDFDQ-------AQ 133
            ++P  YA   ++A A    A         + +RA+RL  DK +++++FD+       A 
Sbjct: 110 TIDPAPYAAEVERAEAQVASAQARQSFSRSEQERAKRLWDDKAIAQREFDERVNAGREAD 169

Query: 134 ANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQYEYVAAKQG---VMNIQTNQLLK 190
           AN  +A+A+ + A+ NL YTQ+ AP  G I  I       VAA  G   +  + +   + 
Sbjct: 170 ANLRAAQASLQSARLNLGYTQVRAPVSGRIGRIEVTVGNLVAAGPGAPVLTTLVSVSPIY 229

Query: 191 VQFLLPDHLLNRFSRD---GVEAHMVFDSFP---------NRQYPLQFQEIDTEADSKTR 238
             F   + ++ R  +D   G  A    +S P            +  + Q ID + D+K+ 
Sbjct: 230 ASFDADEQVITRALKDLPTGSSARGQIESIPVQMGTAGLDGTPFTGKLQLIDNQVDAKSG 289

Query: 239 SYKVTMVMERPNDVGILPGMAGRVSL-MAPSGSATVIPTSALFAEQGGKYVWRVDDAGLV 297
           + +V    +   D  ++PG   R+ +  A S SA ++   A+  +Q  K+V  V +    
Sbjct: 290 TVRVRASFDN-KDGALIPGQFARIRMGQARSDSALLVSERAIGTDQNKKFVMVVGEDSKA 348

Query: 298 SKAAVTL----NEQRQVLTGLNDGDRIIISGVSGVTEGIKV 334
           +   VTL    N  R V  GL  GDR+I++G+  +  G  V
Sbjct: 349 TYREVTLGASINGLRVVSKGLKAGDRVIVNGLQHIRPGALV 389