Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  148 bits (374), Expect = 2e-40
 Identities = 112/353 (31%), Positives = 183/353 (51%), Gaps = 16/353 (4%)

Query: 3   KTLLAFSICSTLLV-GCGKELPPV--PEPDSRPAKLTTVSVGNNTFSRQFPATTAAGDRA 59
           ++LL+  I S LL+ GCG E P +  P P  +PA LT +          F     A  RA
Sbjct: 13  RSLLSAVIASALLLAGCG-EAPQISAPAPVVKPA-LTEIVASQRASDLTFNGVVRAAQRA 70

Query: 60  VLAFRVPGQLQTIDVLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQFQRAQRL- 118
            LAFR+ G+L  I V  G +VKKG++LA L+  +     + A    +  + +++RA+ + 
Sbjct: 71  DLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKAIF 130

Query: 119 RQDKVVSEQDFDQAQANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQYEYVAAKQ 178
            + + +S+ + D+    ++ AK   E+AK  L YTQ+ AP+DG IS    E +  V A Q
Sbjct: 131 EKTQAISKAELDKVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENFAQVQANQ 190

Query: 179 GVMNIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQFQEIDTEADSKTR 238
            +M +Q    L+V   +P  ++    R+   A     + PN+Q+ L+ +   T+  S ++
Sbjct: 191 VIMILQDLNDLEVAIEIPHRVMLSGVRN-TRAIAELSAIPNQQFDLKLRTYSTQPSSDSQ 249

Query: 239 SYKVTMVMERPNDVGILPGMAGRVSLMA--PSGSATVI--PTSALFAE-QGGKYVWRVDD 293
           +Y V +  E      ++PGM+ +V  +A  P+   T+I  P +AL  + QG ++VW V+ 
Sbjct: 250 TYSVVLGFEDLKGFRVMPGMSAKVIPVADKPADENTLITLPLTALVPDNQGKQFVWVVNA 309

Query: 294 AGLVSKAAV---TLNEQRQVLT-GLNDGDRIIISGVSGVTEGIKVREWVKERG 342
                K  V   T  + R V+T  L  G+++II+GVS V EG+ VR +    G
Sbjct: 310 QNQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTVRPYTDNNG 362