Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  108 bits (271), Expect = 2e-28
 Identities = 83/344 (24%), Positives = 164/344 (47%), Gaps = 13/344 (3%)

Query: 1   MNK-TLLAFSICSTLLVGCGKELPPVPEPDSRPA-KLTTVSVGNNTFSRQFPAT--TAAG 56
           MNK T+L+ ++ + L+      +    EP+  PA  + T SV +   S+         A 
Sbjct: 1   MNKNTVLSLTLLTLLM---NSAVLSAKEPNQPPAISVVTESVQSQQISQSLSVVGKLKAE 57

Query: 57  DRAVLAFRVPGQLQTIDVLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQFQRAQ 116
               +A  V G++  I V A Q+VKKG++L +L+ D+      +A A  Q    +    +
Sbjct: 58  QSVDIAAEVAGKVDMIAVQANQQVKKGQILIKLDDDKAQAALVEAKAYLQDEQRKLTEYE 117

Query: 117 RLRQDKVVSEQDFDQAQANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQYEYVAA 176
           RL +   ++  + D  +A     +A    A+ANL    + AP+DGT+  I   + ++V+A
Sbjct: 118 RLLKRNAITPTEIDAQRARVEIGQARLNAAQANLADLHITAPFDGTVGFIDFSRGKWVSA 177

Query: 177 KQGVMNIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQFQEIDTEADSK 236
              ++ +    L+++   +P+  L + S+ G++     +++PN Q+      +D+  + +
Sbjct: 178 GSELLTLDNLSLMRLDLQIPERYLPQLSK-GMKVQGSSEAWPNVQFEGSVVAVDSRINQE 236

Query: 237 TRSYKVTMVMERPNDVGILPGMAGRVSLMAPSGSATVIPTSALFAEQGGKYVWRVDDAGL 296
           T + +V +    P D  + PGM     +  P+ SA +IP  AL      ++V+ + +  +
Sbjct: 237 TLNLRVRVHFPNP-DQRLKPGMLMSARIHFPAISAPIIPVQALEYSGTKRFVYVIGEDNV 295

Query: 297 VSKAAVTL----NEQRQVLTGLNDGDRIIISGVSGVTEGIKVRE 336
             +  V+L      Q  +  GL  G++I++ G+  + +  +V E
Sbjct: 296 AKRREVSLGARVENQVVIEKGLQIGEKIVVQGIVNMRDNARVSE 339