Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 435 a.a., multidrug efflux transport system - putative membrane fusion protein from Pseudomonas putida KT2440

 Score = 88.2 bits (217), Expect = 4e-22
 Identities = 85/332 (25%), Positives = 142/332 (42%), Gaps = 27/332 (8%)

Query: 29  DSRPAKLTTVSVGNNTFSRQFPATTAAGDRAVLAFRVPGQLQTIDVLAGQEVKKGEVLAR 88
           D  P ++  V +G+     +   T  A +   +  RV G+L  I    GQ VK G++LA 
Sbjct: 63  DPVPVRVVPVRIGDFPLYYKALGTVTATNTVNVRSRVAGELVKIHFKEGQRVKAGDLLAE 122

Query: 89  LNPDEYALLEQQA-------SANFQLADVQFQRAQRLRQDKVVSEQDFDQAQAN------ 135
           ++P  Y +  QQA        A  + A V   R + L  +  +++Q  D A+A       
Sbjct: 123 IDPRPYRIALQQAEGTLAQNQAQLKNAQVDLARYKGLYAEDSIAKQTLDTAEAQVAQFQG 182

Query: 136 -HNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQYEYVAAKQ--GVMNIQTNQLLKVQ 192
              + +A    A+ NL +TQ+ AP  G + L   +    VAA     ++ I   + + V 
Sbjct: 183 LVKTNQAQVNDARLNLDFTQIRAPISGRVGLRQLDLGNLVAANDTTALVVITQTEPINVA 242

Query: 193 FLLPD-HLLNRFSRDGVEAHMVFDSFPNRQYPLQ----FQEIDTEADSKTRSYKVTMVME 247
           F LP+  L     R    A +  +++      LQ       ID + D+ T + K     E
Sbjct: 243 FTLPETELSTVLERYRSGASLPVEAWDRGDSKLQSTGVLGSIDNQIDTTTGTLKFKGRFE 302

Query: 248 RPNDVGILPGMAGRVSLMAPSGSATVI-PTSALFAEQGGKYVWRVDDAGLVS----KAAV 302
              D+ + P     V L+A +    V+ P +A+     G + + V++   V+    K   
Sbjct: 303 N-KDLALFPNQFVNVRLLADTLKQVVMAPAAAIQFGNDGTFAYVVNEQSTVNVRKLKVGA 361

Query: 303 TLNEQRQVLTGLNDGDRIIISGVSGVTEGIKV 334
           +  E   +L GL  GDR+++ G   + EG KV
Sbjct: 362 SDGENSVILDGLKAGDRLVLEGTDRLREGTKV 393