Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., RND membrane fusion protein from Pseudomonas putida KT2440

 Score =  108 bits (271), Expect = 2e-28
 Identities = 99/340 (29%), Positives = 151/340 (44%), Gaps = 23/340 (6%)

Query: 14  LLVGCGKELPPVPEPDSRPAKLTTVSVGNNTFSRQFPATTAAGDRAVLAFRVPGQLQTID 73
           LL  CG+E  P   P  RPA L          +  +P    A     LAFR+ G++    
Sbjct: 17  LLAACGQEAAPPAAP--RPA-LVVQPQPAEAAADSYPGEVRARFEPELAFRIGGKVSKRL 73

Query: 74  VLAGQEVKKGEVLARLNPDEYAL-LEQQ------ASANFQLADVQFQRAQRLRQDKVVSE 126
           V  GQ VK  + LA L+P +  L LE        A AN  L   +  R Q+L + ++VS 
Sbjct: 74  VEEGQRVKADQPLAELDPQDVRLQLEANRAQLAAAEANLALVRAERDRYQKLLERQMVSH 133

Query: 127 QDFDQAQANHNSAKATWEQAKANL-------RYTQLIAPYDGTISLIPAEQYEYVAAKQG 179
             +D A+  + +  A  +QAKA          Y  L AP  G I+    E  + VAA Q 
Sbjct: 134 SQYDNAENLYRAGLARLKQAKAEFDVAGNQAEYAVLRAPQAGVIAKRQVEVGQVVAAGQT 193

Query: 180 VMNIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQFQEIDTEADSKTRS 239
           V  +  +   +V   LP+    RF+  G    +   S P  ++  + +E+   AD ++R+
Sbjct: 194 VFTLAADGEREVAIGLPEQQFARFAV-GQPVSVELWSHPQARFQGRIRELSPAADPRSRT 252

Query: 240 YKVTMVMERPNDVGILPGMAGRVSLMAPSGSATVIPTSALFAEQGGKYVWRVDDAGLVSK 299
           +   +          L G + RV +         +P SA+ AE G  YVWRV+    + +
Sbjct: 253 FAARIAFTTAAVPAEL-GQSARVFIAKDGLIPLAVPLSAVTAENGQAYVWRVNKESRLER 311

Query: 300 AAVTL----NEQRQVLTGLNDGDRIIISGVSGVTEGIKVR 335
           A V L    ++   VL GL+ GD ++ +G   + EG +VR
Sbjct: 312 ATVRLGAYGSDSVPVLEGLDPGDWVVAAGGHVLREGQEVR 351