Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 384 a.a., Probable efflux pump periplasmic linker TtgA from Pseudomonas putida KT2440

 Score = 93.2 bits (230), Expect = 1e-23
 Identities = 93/346 (26%), Positives = 157/346 (45%), Gaps = 26/346 (7%)

Query: 12  STLLVGCGKELPPVPEPDSRPAKLTTVSVGNNTFSRQFPATTAAGDRAVLAFRVPGQLQT 71
           +TLL GC KE    P   +    + T+     T + + P  T+A   A +  +V G +  
Sbjct: 17  ATLLSGCKKE-EAAPAAQAPQVGVVTIQPQAFTLTSELPGRTSAYRVAEVRPQVNGIILK 75

Query: 72  IDVLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQFQRAQRLRQDKVVSEQDFDQ 131
                G EVK+G+ L +++P  Y      A AN        +R ++L  ++ VS+Q++D 
Sbjct: 76  RLFKEGSEVKEGQQLYQIDPAVYEATLANAKANLLATRSLAERYKQLIDEQAVSKQEYDD 135

Query: 132 AQANHNSAKATWEQAKANLRYTQLIAPYDGTI--------SLIPAEQYEYVAAKQGVMNI 183
           A A    A+A+ + A+ +LRYT+++AP  G I        +L+   Q + +A  Q +  I
Sbjct: 136 ANAKRLQAEASLKSAQIDLRYTKVLAPISGRIGRSSFTEGALVSNGQTDAMATIQQLDPI 195

Query: 184 ------QTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFD--SFPNRQYPLQFQEIDTEADS 235
                  T +LLK++  L    L +   +     +V +  S   ++  L+F E+    D 
Sbjct: 196 YVDVTQSTAELLKLRRDLESGQLQKAGDNAASVQLVLEDGSLFKQEGRLEFSEV--AVDE 253

Query: 236 KTRSYKVTMVMERPNDVGILPGMAGRVSLMA-PSGSATVIPTSALFAE-QGGKYVWRVDD 293
            T S  +  +   P D  +LPGM     L A  + +A + P   +  + +G      V+ 
Sbjct: 254 TTGSVTLRALFPNP-DHTLLPGMFVHARLKAGVNANAILAPQQGVTRDLKGAPTALVVNQ 312

Query: 294 AGLVS----KAAVTLNEQRQVLTGLNDGDRIIISGVSGVTEGIKVR 335
              V     KA+ TL     +  GLN GDR+I  G+  V  G++V+
Sbjct: 313 ENKVELRQLKASRTLGSDWLIEEGLNPGDRLITEGLQYVRPGVEVK 358