Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., Probable Co/Zn/Cd efflux system membrane fusion protein from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  114 bits (286), Expect = 3e-30
 Identities = 108/356 (30%), Positives = 159/356 (44%), Gaps = 39/356 (10%)

Query: 6   LAFSICSTLLVGCGKELPPVPEPDSRPAKLTTVSVGNNTFSRQFPATTAAGDRAVLAFRV 65
           LA S CS          PP PE   R  KL TV  GN     ++     A   + L FRV
Sbjct: 14  LALSACSR---------PPAPEEPIRSVKLLTVGTGNVVARSEYAGEVRARTESRLGFRV 64

Query: 66  PGQLQTIDVLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQ-------FQRAQRL 118
            G+L       GQ VK G++LA+L+  + AL  Q A A    A  Q        +R Q L
Sbjct: 65  GGKLVARPAEVGQRVKPGQLLAQLDAQDLALSSQAAQAQVSAAQTQRDLAAADLKRYQDL 124

Query: 119 RQDKVVSEQDFDQAQANHNSAKATWEQAKA-------NLRYTQLIAPYDGTISLIPAEQY 171
           +    VS  + ++ QA   SA+AT  QAKA          Y +L+A  DG +  + AE  
Sbjct: 125 QAQGFVSGAEIERRQATLQSAEATLRQAKAQGAVQGNQAGYARLLADGDGVVLSVEAEVG 184

Query: 172 EYVAAKQGVMNIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVF----DSFPNRQYPLQ-- 225
           + VAA   V+ +  +    V   +P+  + +  R G  A +       +      PL+  
Sbjct: 185 QVVAAGTPVVRVARDGARDVVIAVPEDRVAQI-RPGATAQVRLWAGAGAASAAAAPLEAT 243

Query: 226 FQEIDTEADSKTRSYKVTMVMERPNDVGILPGMAGRVSL-MAPSGSATV-IPTSALFAEQ 283
            +E+   AD+ TR+Y+V + +  P+   +  G    V+L  A +G A + +PTSAL    
Sbjct: 244 VREVAASADAATRTYQVKLSL--PDGAAVPLGATAYVTLGGAVAGPAVIKLPTSALMRAD 301

Query: 284 GGKYVWRVD-DAGLVS----KAAVTLNEQRQVLTGLNDGDRIIISGVSGVTEGIKV 334
            G  VW  D  AG V     K A     +  +L GL  G+ ++ +GV  ++ G KV
Sbjct: 302 QGSAVWVFDAAAGTVQPRPVKVAGADGNEMVILDGLKPGEEVVATGVHVLSPGQKV 357