Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 412 a.a., MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit from Pantoea agglomerans CFBP13505 P0401

 Score = 85.5 bits (210), Expect = 2e-21
 Identities = 79/309 (25%), Positives = 136/309 (44%), Gaps = 27/309 (8%)

Query: 52  TTAAGDRAVLAFRVPGQLQTIDVLAGQEVKKGEVLARLNPDEYALLEQQA-------SAN 104
           T  A + A +  RV G L  I    GQ+VK GE+LA ++P  Y +   QA        A 
Sbjct: 81  TVTAANTATVRSRVNGDLLAIHFTEGQQVKAGELLAEVDPRPYQVALTQAQGQLAKDQAT 140

Query: 105 FQLADVQFQRAQRLRQDKVVSEQDFDQAQANHNSAKATWE-------QAKANLRYTQLIA 157
              A     R ++L +  +VS+Q+ D  ++  +    T +        A+ NL Y+++ A
Sbjct: 141 LANARRDLARFEKLAKTSLVSQQELDTQRSLVSETLGTLKADEGSVASAQLNLTYSRITA 200

Query: 158 PYDGTISLIPAEQYEYVAA--KQGVMNIQTNQLLKVQFLLPDHLLNRFSRDGVEAH-MVF 214
           P  G + L   +   YV +    G++ I     + V F L ++ ++   +       ++ 
Sbjct: 201 PIAGRVGLKQVDVGNYVTSGDTTGIVVITQTHPIDVVFTLAENSISSILKAQKSGESLLV 260

Query: 215 DSFPNRQYPL----QFQEIDTEADSKTRSYKVTMVMERPNDVGILPGMAGRVSLMAPS-G 269
           +++      L    +   +D + D  T + K+    +  +D  + P     V L   +  
Sbjct: 261 EAWDRSNQNLIANGKLLSLDNQIDVTTGTIKIKARFDNQDDT-LFPNQFVNVRLKVNTLQ 319

Query: 270 SATVIPTSALFAEQGGKYVWRVDDAGLVSKAAVTL----NEQRQVLTGLNDGDRIIISGV 325
            A VIP +AL     G +VW V+    VSK +V      +E+  V  GL  G+R++  G+
Sbjct: 320 DAIVIPPAALQMGNEGNFVWVVNSDNKVSKKSVIAGLQDSEKVVVSAGLEAGERVVTDGL 379

Query: 326 SGVTEGIKV 334
             +TEG KV
Sbjct: 380 DRLTEGAKV 388