Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 374 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Magnetospirillum magneticum AMB-1

 Score = 80.1 bits (196), Expect = 8e-20
 Identities = 76/274 (27%), Positives = 126/274 (45%), Gaps = 17/274 (6%)

Query: 65  VPGQLQTIDVLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQFQRAQRLRQDKVV 124
           V G ++ I   +GQ+VK+G+VL +L+ D      + A A   LA     R  +L +   V
Sbjct: 77  VAGLVKAISFESGQDVKRGQVLVQLDTDVEMGDLRSAQAELGLAKTSHDRNMKLVRSDTV 136

Query: 125 SEQDFDQAQANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQYEYVAAKQGVMNIQ 184
           S    ++ +A     +A     +A +    + AP+DG + +   +  +YV   Q V+N+Q
Sbjct: 137 SVAALEKTEAELKVKQAKVGGLQAQIAKKTIAAPFDGRLGVRKIDLGQYVQPGQMVVNLQ 196

Query: 185 TNQLLKVQFLLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQFQEIDTEADSKTRSYKVTM 244
              L+   F +    L+     G    M  D++P   +  Q   I+   D+KT    V++
Sbjct: 197 DLSLMLCDFTVSQKDLSLLG-IGQTVRMTTDAWPGVTFEGQVAAIEPLVDAKTG--MVSV 253

Query: 245 VMERPNDVGIL-PGMAGRVSLMAPSGSATV-IPTSALFAEQGGKYVWRVD-----DAGLV 297
               PN  G L PGM  R+ +  P+G+  V +P SA+     G  V+ V      D   V
Sbjct: 254 QARFPNAEGRLRPGMFARIEIERPAGAPVVTVPGSAVAYNLHGDAVFVVKEEAGADGKTV 313

Query: 298 SKA---AVTLNEQRQ----VLTGLNDGDRIIISG 324
           SKA    V+L E++     + +G+  GD ++ SG
Sbjct: 314 SKAERVVVSLGERKDGLVVIKSGVAAGDVVVTSG 347