Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 415 a.a., putative membrane protein (VIMSS) from Escherichia coli BW25113

 Score = 86.3 bits (212), Expect = 1e-21
 Identities = 76/308 (24%), Positives = 136/308 (44%), Gaps = 25/308 (8%)

Query: 52  TTAAGDRAVLAFRVPGQLQTIDVLAGQEVKKGEVLARLNPDEYALLEQQA-------SAN 104
           T  A +   +  RV GQL  +    GQ+VK G++LA ++P ++ +   QA        A 
Sbjct: 81  TITAANTVTVRSRVDGQLIALHFQEGQQVKAGDLLAEIDPSQFKVALAQAQGQLAKDKAT 140

Query: 105 FQLADVQFQRAQRLRQDKVVSEQDFDQAQANHNSAKATWE-------QAKANLRYTQLIA 157
              A     R Q+L +  +VS Q+ D  QA  +  + T +        A+  L ++++ A
Sbjct: 141 LANARRDLARYQQLAKTNLVSRQELDAQQALVSETEGTIKADEASVASAQLQLDWSRITA 200

Query: 158 PYDGTISLIPAEQYEYVAA--KQGVMNIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFD 215
           P DG + L   +    +++    G++ I     + + F LP+  +    +       +  
Sbjct: 201 PVDGRVGLKQVDVGNQISSGDTTGIVVITQTHPIDLVFTLPESDIATVVQAQKAGKPLVV 260

Query: 216 SFPNRQYPLQFQE-----IDTEADSKTRSYKVTMVMERPNDVGILPGMAGRVSLMAPSGS 270
              +R    +  E     +D + D+ T + KV       +D            L+    +
Sbjct: 261 EAWDRTNSKKLSEGTLLSLDNQIDATTGTIKVKARFNNQDDALFPNQFVNARMLVDTEQN 320

Query: 271 ATVIPTSALFAEQGGKYVWRVDDAGLVSKAAVT--LNEQRQVL--TGLNDGDRIIISGVS 326
           A VIPT+AL     G +VW ++    VSK  VT  + + ++V+   G++ GDR++  G+ 
Sbjct: 321 AVVIPTAALQMGNEGHFVWVLNSENKVSKHLVTPGIQDSQKVVIRAGISAGDRVVTDGID 380

Query: 327 GVTEGIKV 334
            +TEG KV
Sbjct: 381 RLTEGAKV 388