Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 371 a.a., putative membrane protein (VIMSS) from Escherichia coli BW25113

 Score = 81.6 bits (200), Expect = 3e-20
 Identities = 86/301 (28%), Positives = 133/301 (44%), Gaps = 47/301 (15%)

Query: 64  RVPGQLQTIDVLAGQEVKKGEVLARLNPD---------EYALLE-----QQASANFQLAD 109
           +V GQL+T+ V  G +VKK ++L  ++P+         E  L+E     QQA A  +LA 
Sbjct: 67  QVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLAR 126

Query: 110 VQFQRAQRLRQDKVVSEQDFDQA--------------QANHNSAKATWEQAKANLRYTQL 155
           V + R QRL Q K VS+QD D A               A     +A+ + AK NL YT++
Sbjct: 127 VTYSRQQRLAQTKAVSQQDLDTAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRI 186

Query: 156 IAPYDGTISLIPAEQYEYVAAKQGVMNIQT-----NQLLKVQFLLPD--HLLNRFSRDGV 208
           +AP  G ++ I   Q + V A Q   NI T       L+K Q    D  HL     + G 
Sbjct: 187 VAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSAMLVKAQVSEADVIHL-----KPGQ 241

Query: 209 EAHMVFDSFPNRQYPLQFQEIDTEADSKTRSYKVTMVMERPNDVGILP-GMAGRVSL-MA 266
           +A       P  +Y  Q +++    +    +       E PN  G+L   M  +V + + 
Sbjct: 242 KAWFTVLGDPLTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQLT 301

Query: 267 PSGSATVIPTSALFAEQG-GKYVWRVDDAGLVSKAAVTLNEQR----QVLTGLNDGDRII 321
              +   IP SAL    G  +Y  ++   G   +  VT+  +     +++ GL  GD ++
Sbjct: 302 DVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVV 361

Query: 322 I 322
           I
Sbjct: 362 I 362