Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 382 a.a., RND family efflux transporter, MFP subunit from Enterobacter asburiae PDN3

 Score = 93.6 bits (231), Expect = 7e-24
 Identities = 90/347 (25%), Positives = 150/347 (43%), Gaps = 27/347 (7%)

Query: 5   LLAFSICSTLLVGCGKELPPVPEPDSRPAKLTTVSVGNNTFSRQFPATTAAGDRAVLAFR 64
           LLA +I    L GCG +    P+P +R  +   V       + +      A D   L+FR
Sbjct: 33  LLALAIFP--LTGCGDKHENKPDP-ARAVRYVVVGAAQTLPALERTGEIHAHDETTLSFR 89

Query: 65  VPGQLQTIDVLAGQEVKKGEVLARLNP-------DEYALLEQQASANFQLADVQFQRAQR 117
             G++ T  V  G  V  G++LA L+        D  A   + A A+ Q+A +   R Q+
Sbjct: 90  TGGRILTRSVDIGDRVTAGQLLATLDNTTGQNQLDGAAADYEGAKASAQVAALNVSRMQK 149

Query: 118 LRQDKVVSEQDFDQAQANH-------NSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQ 170
           L     ++    D A+A+         S++A W  A+ +L +T+LIAP  G I+ + A  
Sbjct: 150 LMPTGAIARTQLDSARADWLVARARLKSSEAAWRNARESLGWTRLIAPQAGVITAVNASA 209

Query: 171 YEYVAAKQGVMNIQTNQLLKVQF--LLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQFQE 228
            + V+  Q V+ + T +   V F    PD +      D     +   S P+ Q     ++
Sbjct: 210 GQVVSDGQSVLTLATGEARDVAFDIATPDAIP---PLDKAFLRVSLLSDPSVQASAALRD 266

Query: 229 IDTEADSKTRSYKVTMVMERPNDVGILPGMAGRVSLMAPSGSATVIPTSALFAEQGGKYV 288
           I  +AD +TR+++V   ++ P    +  G +  V+L + +     +P SAL        V
Sbjct: 267 ITPQADPQTRTWRVRATLQNP-PAAMALGASVTVTLPSSAPRGYTLPASALTRVGDKPAV 325

Query: 289 WRVDDAGLVSKAAVT----LNEQRQVLTGLNDGDRIIISGVSGVTEG 331
           + +         AV           + +GL  GDR+I +GVS +  G
Sbjct: 326 FVITPQSRAQLRAVVPASYTASSVMIASGLEPGDRVITAGVSTLRSG 372