Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 328 a.a., RND family efflux transporter, MFP subunit from Enterobacter asburiae PDN3

 Score =  142 bits (358), Expect = 1e-38
 Identities = 96/329 (29%), Positives = 163/329 (49%), Gaps = 21/329 (6%)

Query: 35  LTTVSVGNNTFSRQFPATTAAGDRAVLAFRVPGQLQTIDVLAGQEVKKGEVLARLNPDEY 94
           +  V+V  +   R FPA   +GD   L+F+  GQ++ +DV  G  +K+G+ LARLN  E 
Sbjct: 1   MAEVTVPGHAQQRVFPARIESGDATDLSFKRAGQIEALDVRQGAAIKQGQQLARLNAREA 60

Query: 95  ALLEQQASANFQLADVQFQRAQRLRQDKVVSEQDFDQAQANHNSAKATWEQAKANLRYTQ 154
                       LA  QF R Q L   + +S+ + D  +AN +SA A  + A+  L    
Sbjct: 61  QQRVNDRQTAATLAQRQFDRFQTLAGRQAISKAEMDVQRANRDSANAALQIAREELNQMT 120

Query: 155 LIAPYDGTISLIPAEQYEYVAAKQGVMNIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMV- 213
           L+AP+ GT + +    ++ V+  Q +  +    LL V F +P++L   F     +   V 
Sbjct: 121 LVAPFSGTAASVHVRNHQVVSPGQPIATLTRTDLLDVVFSIPENLFKTFDIRNAQYRPVV 180

Query: 214 -FDSFPNRQYPLQFQEIDTEADSKTRSYKVTMVMERPNDVGILPGMAGRVSL---MAPSG 269
             ++ P+R++   ++E    +DS T +++V + M RP+D   + G++G V++     P+G
Sbjct: 181 RINAMPDREFTAVYKEHSGSSDSNTLTWQVILTMPRPDDFPAVGGVSGTVTINLTNLPAG 240

Query: 270 S---ATVIPTSALF----AEQGGKYVWRVDDAG--------LVSKAAVTLNEQRQVLTGL 314
           +   A V+P  A+F    + +   +VW V   G         VS   V+  E   + +GL
Sbjct: 241 ADAQALVVPVEAVFNPNNSPRNEPHVWVVTGEGDALHLEDRKVSVGQVS-TEGVVITSGL 299

Query: 315 NDGDRIIISGVSGVTEGIKVREWVKERGL 343
             G+R++ +GV  +     VR W +ERGL
Sbjct: 300 KAGERVVAAGVGELHANQPVRIWTRERGL 328