Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 400 a.a., RND family efflux transporter, MFP subunit from Enterobacter asburiae PDN3

 Score = 87.0 bits (214), Expect = 7e-22
 Identities = 77/308 (25%), Positives = 135/308 (43%), Gaps = 25/308 (8%)

Query: 52  TTAAGDRAVLAFRVPGQLQTIDVLAGQEVKKGEVLARLNPDEYALLEQQA-------SAN 104
           T  A +   +  RV GQL  I    GQ+VK G++LA ++P ++ +   QA        A 
Sbjct: 81  TITAANTVTVRSRVDGQLMAIHFQEGQQVKAGDLLAEIDPSQFKVALAQAQGQLAKDKAT 140

Query: 105 FQLADVQFQRAQRLRQDKVVSEQDFD-------QAQANHNSAKATWEQAKANLRYTQLIA 157
              A     R Q+L +  +VS Q+ D       + Q    + +A    A+  L ++++ A
Sbjct: 141 LANARRDLVRYQQLVKTNLVSRQELDTQQSLVSETQGTIKADEAAVASAQLQLDWSRITA 200

Query: 158 PYDGTISLIPAEQYEYVAA--KQGVMNIQTNQLLKVQFLLPD-HLLNRFSRDGVEAHMVF 214
           P DG + L   +    +++    G++ I     + + F LP+  +            +V 
Sbjct: 201 PIDGRVGLKQVDIGNQISSGDTTGIVVITQTHPIDLVFTLPESDIATVVQAQKAGKGLVV 260

Query: 215 DSF--PNRQYPLQ--FQEIDTEADSKTRSYKVTMVMERPNDVGILPGMAGRVSLMAPSGS 270
           +++   N+Q   +     +D + D+ T + K+       +D            L+A   +
Sbjct: 261 EAWDRSNKQKLSEGSLLSLDNQIDTTTGTIKLKARFNNQDDALFPNQFVNARMLVATEEN 320

Query: 271 ATVIPTSALFAEQGGKYVWRVDDAGLVSKAAVTLNEQRQ----VLTGLNDGDRIIISGVS 326
           A VIPT+AL     G +VW ++D   VSK  V    Q      +  GL+ G+R++  G+ 
Sbjct: 321 AVVIPTAALQMGNEGNFVWVLNDDNKVSKHLVKTGIQDSQTVVIAAGLSAGERVVTDGID 380

Query: 327 GVTEGIKV 334
            +TEG KV
Sbjct: 381 RLTEGAKV 388